Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEK16464.1 | EEK16474.1 | PORUE0001_1719 | PORUE0001_1754 | Hypothetical protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.725 |
| EEK16464.1 | EEK16483.1 | PORUE0001_1719 | PORUE0001_1755 | Hypothetical protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.796 |
| EEK16464.1 | EEK16504.1 | PORUE0001_1719 | PORUE0001_1753 | Hypothetical protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.875 |
| EEK16464.1 | EEK16727.1 | PORUE0001_1719 | PORUE0001_1259 | Hypothetical protein. | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | 0.602 |
| EEK16464.1 | EEK16734.1 | PORUE0001_1719 | PORUE0001_1258 | Hypothetical protein. | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.602 |
| EEK16464.1 | EEK16915.1 | PORUE0001_1719 | PORUE0001_0626 | Hypothetical protein. | Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.717 |
| EEK16464.1 | EEK17649.1 | PORUE0001_1719 | PORUE0001_0449 | Hypothetical protein. | Sodium ion-translocating decarboxylase, beta subunit; Identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109. | 0.453 |
| EEK16464.1 | fumB | PORUE0001_1719 | PORUE0001_1255 | Hypothetical protein. | Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723. | 0.416 |
| EEK16464.1 | maeB | PORUE0001_1719 | PORUE0001_0737 | Hypothetical protein. | Malate dehydrogenase (oxaloacetate-decarboxylating); Identified by match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949. | 0.765 |
| EEK16464.1 | mdh | PORUE0001_1719 | PORUE0001_1771 | Hypothetical protein. | Lactate/malate dehydrogenase, NAD binding domain protein; Identified by match to protein family HMM PF00056; match to protein family HMM PF02866; Belongs to the LDH/MDH superfamily. | 0.601 |
| EEK16464.1 | nifJ | PORUE0001_1719 | PORUE0001_0886 | Hypothetical protein. | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.949 |
| EEK16464.1 | ppdK | PORUE0001_1719 | PORUE0001_0646 | Hypothetical protein. | Pyruvate, phosphate dikinase; Identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828; Belongs to the PEP-utilizing enzyme family. | 0.457 |
| EEK16464.1 | pta | PORUE0001_1719 | PORUE0001_1352 | Hypothetical protein. | Phosphate acetyltransferase; Identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651. | 0.400 |
| EEK16474.1 | EEK16464.1 | PORUE0001_1754 | PORUE0001_1719 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein. | 0.725 |
| EEK16474.1 | EEK16483.1 | PORUE0001_1754 | PORUE0001_1755 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.988 |
| EEK16474.1 | EEK16504.1 | PORUE0001_1754 | PORUE0001_1753 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.804 |
| EEK16474.1 | EEK16693.1 | PORUE0001_1754 | PORUE0001_0836 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. | 0.542 |
| EEK16474.1 | EEK16727.1 | PORUE0001_1754 | PORUE0001_1259 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. | 0.566 |
| EEK16474.1 | EEK16734.1 | PORUE0001_1754 | PORUE0001_1258 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.566 |
| EEK16474.1 | EEK16915.1 | PORUE0001_1754 | PORUE0001_0626 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.685 |
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