(6 nodes) Nitrogen metabolism network (Porphyromonas uenonis 603)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gdh	Glutamate dehydrogenase, NAD-specific; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (445 aa)
	gltA	Glutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316. (491 aa)
	EEK17315.1	Identified by match to protein family HMM PF01106. (97 aa)
	EEK17101.1	Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. (469 aa)
	EEK17603.1	Hypothetical protein. (159 aa)
	sulP	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815. (559 aa)

Your Current Organism:

Porphyromonas uenonis 603

NCBI taxonomy Id: 596327
Other names: P. uenonis 60-3, Porphyromonas uenonis 60-3, Porphyromonas uenonis str. 60-3, Porphyromonas uenonis strain 60-3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEK17101.1	EEK17603.1	PORUE0001_0986	PORUE0001_0188	Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.	Hypothetical protein.	0.538
EEK17315.1	EEK17603.1	PORUE0001_1240	PORUE0001_0188	Identified by match to protein family HMM PF01106.	Hypothetical protein.	0.464
EEK17603.1	EEK17101.1	PORUE0001_0188	PORUE0001_0986	Hypothetical protein.	Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.	0.538
EEK17603.1	EEK17315.1	PORUE0001_0188	PORUE0001_1240	Hypothetical protein.	Identified by match to protein family HMM PF01106.	0.464
gdh	gltA	PORUE0001_0508	PORUE0001_0562	Glutamate dehydrogenase, NAD-specific; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.	0.970
gdh	sulP	PORUE0001_0508	PORUE0001_0378	Glutamate dehydrogenase, NAD-specific; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	0.444
gltA	gdh	PORUE0001_0562	PORUE0001_0508	Glutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.	Glutamate dehydrogenase, NAD-specific; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.970
gltA	sulP	PORUE0001_0562	PORUE0001_0378	Glutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	0.440
sulP	gdh	PORUE0001_0378	PORUE0001_0508	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Glutamate dehydrogenase, NAD-specific; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.444
sulP	gltA	PORUE0001_0378	PORUE0001_0562	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Glutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.	0.440