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| | sda | L-serine ammonia-lyase; Identified by match to protein family HMM PF03313; match to protein family HMM PF03315; Belongs to the iron-sulfur dependent L-serine dehydratase family. (412 aa) |
| | EEK17456.1 | Identified by match to protein family HMM PF03372. (352 aa) |
| | EEK16626.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (136 aa) |
| | EEK16464.1 | Hypothetical protein. (391 aa) |
| | tkt | Transketolase, thiamine diphosphate binding domain protein; Identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; Belongs to the transketolase family. (695 aa) |
| | glcK | ROK family protein; Identified by match to protein family HMM PF00480. (322 aa) |
| | EEK16445.1 | Hypothetical protein. (245 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (194 aa) |
| | hpt | Putative hypoxanthine phosphoribosyltransferase; Identified by match to protein family HMM PF00156. (180 aa) |
| | EEK16469.1 | Acyltransferase; Identified by match to protein family HMM PF01553. (181 aa) |
| | EEK16442.1 | Identified by match to protein family HMM PF02769. (386 aa) |
| | mdh | Lactate/malate dehydrogenase, NAD binding domain protein; Identified by match to protein family HMM PF00056; match to protein family HMM PF02866; Belongs to the LDH/MDH superfamily. (332 aa) |
| | eno | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (441 aa) |
| | ilvE | Branched-chain-amino-acid transaminase; Identified by match to protein family HMM PF01063; match to protein family HMM TIGR01123. (339 aa) |
| | hemD | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (251 aa) |
| | EEK17258.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (43 aa) |
| | EEK17632.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (145 aa) |
| | EEK17631.1 | Alpha amylase, C-terminal all-beta domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02806. (120 aa) |
| | EEK17783.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (165 aa) |
| | EEK16208.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (125 aa) |
| | EEK17486.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (111 aa) |
| | EEK17778.1 | Hypothetical protein; Identified by glimmer; putative. (64 aa) |
| | EEK16780.1 | Hypothetical protein; Identified by glimmer; putative. (58 aa) |
| | EEK16061.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (71 aa) |
| | EEK17261.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK17749.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK17500.1 | Transposase, IS116/IS110/IS902 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02371. (163 aa) |
| | EEK16211.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (214 aa) |
| | EEK16060.1 | Transposase, IS116/IS110/IS902 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02371. (125 aa) |
| | EEK16210.1 | Transposase, IS116/IS110/IS902 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02371. (147 aa) |
| | EEK17341.1 | Transposase, IS116/IS110/IS902 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02371. (163 aa) |
| | EEK15883.1 | Hypothetical protein; Identified by glimmer; putative. (45 aa) |
| | EEK15884.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (56 aa) |
| | EEK15885.1 | Hypothetical protein; Identified by glimmer; putative. (51 aa) |
| | EEK15886.1 | Hypothetical protein; Identified by glimmer; putative. (43 aa) |
| | EEK17354.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (77 aa) |
| | EEK17627.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (66 aa) |
| | EEK17260.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (83 aa) |
| | EEK16788.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (77 aa) |
| | EEK15895.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (76 aa) |
| | EEK17264.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK16245.1 | Hypothetical protein; Identified by glimmer; putative. (58 aa) |
| | EEK16775.1 | Hypothetical protein; Identified by glimmer; putative. (64 aa) |
| | EEK17256.1 | Transposase, IS116/IS110/IS902 family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02371. (145 aa) |
| | EEK15894.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (121 aa) |
| | EEK16741.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK16152.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK17157.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK16065.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (121 aa) |
| | EEK16064.1 | Alpha amylase, C-terminal all-beta domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02806. (145 aa) |
| | EEK17652.1 | Starch synthase catalytic domain protein; Overlaps another CDS with the same product name; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF08323. (142 aa) |
| | EEK17653.1 | Hypothetical protein; Overlaps another CDS with the same product name; this gene contains a nucleotide ambiguity which may be the result of a sequencing error. (131 aa) |
| | EEK16725.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (160 aa) |
| | EEK16772.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (67 aa) |
| | EEK16807.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (115 aa) |
| | EEK17352.1 | Hypothetical protein; Identified by glimmer; putative. (45 aa) |
| | EEK16791.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (74 aa) |
| | EEK17420.1 | Hypothetical protein; Identified by glimmer; putative. (45 aa) |
| | EEK16170.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (119 aa) |
| | psd | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). (224 aa) |
| | EEK16039.1 | Putative CDP-diacylglycerol-serine O-phosphatidyltransferase; Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (253 aa) |
| | EEK16045.1 | Putative phosphoribosylformylglycinamidine synthase; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769. (1233 aa) |
| | gcvT | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. (363 aa) |
| | asd | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (338 aa) |
| | EEK16035.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK17066.1 | Identified by match to protein family HMM PF00582. (394 aa) |
| | ribB | 3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. (406 aa) |
| | panC | Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (286 aa) |
| | EEK17124.1 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (87 aa) |
| | EEK17135.1 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (66 aa) |
| | gltX | glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (527 aa) |
| | ribB-2 | 3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. (211 aa) |
| | pfkA | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (327 aa) |
| | miaA-2 | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (323 aa) |
| | tpiA | Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (254 aa) |
| | EEK17096.1 | 5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family. (493 aa) |
| | rpiB | Ribose-5-phosphate isomerase B; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120. (145 aa) |
| | serB | Phosphoserine phosphatase SerB; Identified by match to protein family HMM PF00702; match to protein family HMM PF01842; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488. (429 aa) |
| | pckA | Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (537 aa) |
| | EEK16420.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK16441.1 | Class II glutamine amidotransferase; Identified by match to protein family HMM PF00310. (634 aa) |
| | EEK16419.1 | Methyltransferase small domain protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (238 aa) |
| | EEK16428.1 | HAD hydrolase, TIGR02254 family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254. (247 aa) |
| | EEK16438.1 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. (309 aa) |
| | EEK16417.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | LYS1 | Saccharopine dehydrogenase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03435. (399 aa) |
| | glgB | Alpha amylase, catalytic domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922. (680 aa) |
| | hemG | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (457 aa) |
| | aroC | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (362 aa) |
| | nqrB | NADH:ubiquinone oxidoreductase, B subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (407 aa) |
| | tilS | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (494 aa) |
| | purD | Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02655; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family. (457 aa) |
| | rnfD | Electron transport complex, RnfABCDGE type, D subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. (329 aa) |
| | surE | 5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (254 aa) |
| | EEK17324.1 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. (383 aa) |
| | rfbD | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (300 aa) |
| | EEK17328.1 | Hypothetical protein; Identified by glimmer; putative. (721 aa) |
| | EEK17301.1 | Putative mannose-6-phosphate isomerase, class I; Identified by match to protein family HMM PF01238. (311 aa) |
| | EEK17294.1 | Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722. (280 aa) |
| | fumB | Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723. (185 aa) |
| | EEK17309.1 | Starch synthase catalytic domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF08323. (133 aa) |
| | EEK16733.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (148 aa) |
| | EEK16734.1 | Pyruvate synthase; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (87 aa) |
| | EEK16727.1 | 2-oxoacid:acceptor oxidoreductase, alpha subunit; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. (536 aa) |
| | orB | 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Identified by match to protein family HMM PF02775. (347 aa) |
| | EEK16728.1 | HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. (206 aa) |
| | EEK16735.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK16558.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (150 aa) |
| | manC | Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483. (362 aa) |
| | EEK16593.1 | Hypothetical protein. (165 aa) |
| | map | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. (263 aa) |
| | EEK16550.1 | Hypothetical protein; Identified by glimmer; putative. (401 aa) |
| | purN | Putative phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. (195 aa) |
| | acpP | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (79 aa) |
| | fbp | Firmicute fructose-1,6-bisphosphatase; Identified by match to protein family HMM PF06874. (679 aa) |
| | EEK16088.1 | Putative cytochrome c-type biogenesis protein CcsB; Identified by match to protein family HMM PF01578. (746 aa) |
| | ribE | Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187. (200 aa) |
| | gcvP | Glycine dehydrogenase; Identified by match to protein family HMM PF02347; match to protein family HMM TIGR00461; Belongs to the GcvP family. (961 aa) |
| | EEK16137.1 | Identified by match to protein family HMM PF03061. (157 aa) |
| | pdxB-2 | 4-phosphoerythronate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (323 aa) |
| | EEK16127.1 | Carboxyl transferase domain protein; Identified by match to protein family HMM PF01039. (517 aa) |
| | batA | Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092. (326 aa) |
| | EEK16276.1 | N-terminal double-transmembrane domain protein; Identified by match to protein family HMM PF00092; match to protein family HMM TIGR02226. (342 aa) |
| | batD | BatD protein; Identified by glimmer; putative. (595 aa) |
| | glgP | Alpha-glucan phosphorylase; Identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094. (857 aa) |
| | EEK17721.1 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. (393 aa) |
| | EEK17694.1 | acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (379 aa) |
| | fsa | Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (221 aa) |
| | aroE | Putative shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. (250 aa) |
| | ubiE | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). (234 aa) |
| | purC | Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Identified by match to protein family HMM PF01259; Belongs to the SAICAR synthetase family. (314 aa) |
| | panD | Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (115 aa) |
| | sdhC | Succinate dehydrogenase cytochrome B subunit, b558 family; Identified by match to protein family HMM TIGR02046. (268 aa) |
| | sdhA | Succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM TIGR01811. (647 aa) |
| | frdB | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Identified by match to protein family HMM PF00037. (251 aa) |
| | trmD | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (225 aa) |
| | EEK17678.1 | Hypothetical protein. (390 aa) |
| | EEK17657.1 | Putative trigger factor; Identified by match to protein family HMM PF05697. (475 aa) |
| | ispE | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (281 aa) |
| | dxs | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (633 aa) |
| | EEK16158.1 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. (229 aa) |
| | EEK17495.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (67 aa) |
| | EEK17457.1 | Putative 3-deoxy-7-phosphoheptulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM PF01817. (365 aa) |
| | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (188 aa) |
| | rfbB | dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (386 aa) |
| | rpe | Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family. (215 aa) |
| | rfbA | Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (290 aa) |
| | purB | Adenylosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM PF08328; match to protein family HMM TIGR00928; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (406 aa) |
| | prs | Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (312 aa) |
| | EEK17359.1 | Putative inosine-5'-monophosphate dehydrogenase; Identified by match to protein family HMM PF00478; match to protein family HMM PF00571. (500 aa) |
| | miaA | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (313 aa) |
| | gcvH | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (126 aa) |
| | purE | Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). (169 aa) |
| | ispG | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (596 aa) |
| | EEK17001.1 | Hypothetical protein; Identified by glimmer; putative. (273 aa) |
| | ribF | Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family. (304 aa) |
| | EEK17017.1 | LytB protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (306 aa) |
| | ispF | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). (158 aa) |
| | prmA | Ribosomal protein L11 methyltransferase; Identified by match to protein family HMM PF06325. (305 aa) |
| | EEK16989.1 | Hypothetical protein. (281 aa) |
| | EEK16990.1 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. (369 aa) |
| | metK | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (429 aa) |
| | EEK17016.1 | Acyltransferase; Identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. (249 aa) |
| | EEK16993.1 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. (121 aa) |
| | EEK15939.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (262 aa) |
| | purH | Putative phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Identified by match to protein family HMM PF01808; match to protein family HMM PF02142. (505 aa) |
| | ribD | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (338 aa) |
| | gap | Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (334 aa) |
| | glmM | Phosphoglucosamine mutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880. (465 aa) |
| | EEK17589.1 | Starch synthase catalytic domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF08323. (128 aa) |
| | EEK16601.1 | Tetratricopeptide repeat protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00515. (182 aa) |
| | grpE | Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...] (201 aa) |
| | dapA | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (314 aa) |
| | serC | Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (360 aa) |
| | pdxB | 4-phosphoerythronate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (306 aa) |
| | EEK15995.1 | Putative 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. (428 aa) |
| | EEK15956.1 | Plasmid recombination enzyme; Identified by match to protein family HMM PF01076. (418 aa) |
| | hemH | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (329 aa) |
| | dxr | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. (381 aa) |
| | pgi | Glucose-6-phosphate isomerase; Identified by match to protein family HMM PF00342; Belongs to the GPI family. (455 aa) |
| | gpsA | NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01210; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (335 aa) |
| | EEK17748.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (70 aa) |
| | EEK17507.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (70 aa) |
| | EEK17772.1 | Identified by match to protein family HMM PF03372. (350 aa) |
| | EEK17770.1 | Hypothetical protein; Identified by glimmer; putative. (275 aa) |
| | EEK17756.1 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. (418 aa) |
| | EEK17771.1 | Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065. (418 aa) |
| | EEK16354.1 | 4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446. (605 aa) |
| | panB | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. (273 aa) |
| | EEK16371.1 | acyl-CoA thioester hydrolase, YbgC/YbaW family; Identified by match to protein family HMM PF03061. (149 aa) |
| | EEK16392.1 | Transporter associated domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471. (421 aa) |
| | uppS | Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (238 aa) |
| | EEK16385.1 | Putative 3-dehydroquinate synthase; Identified by match to protein family HMM PF01761. (364 aa) |
| | EEK16403.1 | Putative ubiquinone/menaquinone biosynthesis methyltransferase; Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242. (221 aa) |
| | fabG | 3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (249 aa) |
| | EEK16386.1 | Hypothetical protein. (243 aa) |
| | fabD | [acyl-carrier-protein] S-malonyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128. (292 aa) |
| | EEK16413.1 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. (379 aa) |
| | cobM | Precorrin-4 C(11)-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01465. (611 aa) |
| | ispB | Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. (318 aa) |
| | cdsA | Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family. (281 aa) |
| | EEK17642.1 | Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (371 aa) |
| | EEK17646.1 | Tetratricopeptide repeat protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (186 aa) |
| | EEK16859.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (562 aa) |
| | gldE | Gliding motility-associated protein GldE; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; match to protein family HMM TIGR03520. (452 aa) |
| | gpmA | Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (248 aa) |
| | lpdA | Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350. (456 aa) |
| | panE | 2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (320 aa) |
| | EEK16862.1 | ADP-ribosylglycohydrolase; Identified by match to protein family HMM PF03747. (255 aa) |
| | EEK17686.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (482 aa) |
| | pgk | Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family. (423 aa) |
| | manB | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880. (583 aa) |
| | gltA | Glutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316. (491 aa) |
| | EEK17615.1 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. (305 aa) |
| | EEK17790.1 | Hypothetical protein. (336 aa) |
| | dapB | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. (255 aa) |
| | EEK17817.1 | Glutamine amidotransferase, class I; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. (191 aa) |
| | purB-2 | Adenylosuccinate lyase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (157 aa) |
| | EEK16935.1 | Hypothetical protein. (260 aa) |
| | maf | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. (193 aa) |
| | EEK16905.1 | Putative arginase; Identified by match to protein family HMM PF00491; Belongs to the arginase family. (298 aa) |
| | EEK16889.1 | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. (152 aa) |
| | EEK16917.1 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. (367 aa) |
| | EEK16942.1 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. (385 aa) |
| | EEK16962.1 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. (383 aa) |
| | menD | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. (572 aa) |
| | menB | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). (276 aa) |
| | EEK16930.1 | Putative o-succinylbenzoate synthase; Identified by match to protein family HMM PF01188. (368 aa) |
| | EEK16932.1 | Hypothetical protein. (362 aa) |
| | EEK16915.1 | Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (547 aa) |
| | glyA | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (426 aa) |
| | EEK16921.1 | Hypothetical protein. (369 aa) |
| | aroK | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (178 aa) |
| | ppdK | Pyruvate, phosphate dikinase; Identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828; Belongs to the PEP-utilizing enzyme family. (909 aa) |
| | EEK16871.1 | L-asparaginase, type I; Identified by match to protein family HMM PF00710; match to protein family HMM TIGR00519. (351 aa) |
| | EEK16966.1 | Starch synthase; Identified by match to protein family HMM PF05693. (542 aa) |
| | EEK16933.1 | Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. (271 aa) |
| | fda | Fructose-1,6-bisphosphate aldolase; Identified by match to protein family HMM PF00274; Belongs to the class I fructose-bisphosphate aldolase family. (293 aa) |
| | EEK16703.1 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (65 aa) |
| | ispD | Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01128. (250 aa) |
| | EEK16696.1 | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147. (298 aa) |
| | EEK16720.1 | Identified by match to protein family HMM PF03061; match to protein family HMM PF08282; match to protein family HMM TIGR00369. (420 aa) |
| | vorB | 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); Identified by match to protein family HMM PF01855. (359 aa) |
| | EEK16693.1 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. (267 aa) |
| | porG | 2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit; Identified by match to protein family HMM PF01558. (181 aa) |
| | menA | 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. (293 aa) |
| | lysC | Amino acid kinase family; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00657; Belongs to the aspartokinase family. (458 aa) |
| | EEK16675.1 | Identified by match to protein family HMM PF02525. (175 aa) |
| | EEK16660.1 | Hypothetical protein. (362 aa) |
| | EEK16655.1 | O-methyltransferase; Identified by match to protein family HMM PF01596. (215 aa) |
| | aroQ | Dehydroquinase class II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. (159 aa) |
| | ribH | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. (168 aa) |
| | nifJ | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. (1209 aa) |
| | EEK16175.1 | Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate. (302 aa) |
