(10 nodes) Mixed, incl. Ribonuclease H2 complex, and Copine network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1. (605 aa)
	DCAF1	DDB1 and CUL4 associated factor 1. (1504 aa)
	CPNE2	Copine 2. (544 aa)
	CPNE9	Copine family member 9. (545 aa)
	ENSTGUP00000021082	annotation not available (162 aa)
	CPNE7	Copine-7. (569 aa)
	ENSTGUP00000024996	annotation not available (1147 aa)
	ENSTGUP00000028260	annotation not available (531 aa)
	RNASEH2A	Ribonuclease H2 subunit A. (375 aa)
	RNASEH2B	Ribonuclease H2 subunit B. (313 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPNE2	RNASEH2A	ENSTGUP00000005314	ENSTGUP00000033620	Copine 2.	Ribonuclease H2 subunit A.	0.495
CPNE2	RNASEH2B	ENSTGUP00000005314	ENSTGUP00000037764	Copine 2.	Ribonuclease H2 subunit B.	0.554
CPNE7	RNASEH2A	ENSTGUP00000021941	ENSTGUP00000033620	Copine-7.	Ribonuclease H2 subunit A.	0.495
CPNE7	RNASEH2B	ENSTGUP00000021941	ENSTGUP00000037764	Copine-7.	Ribonuclease H2 subunit B.	0.554
CPNE9	RNASEH2A	ENSTGUP00000008853	ENSTGUP00000033620	Copine family member 9.	Ribonuclease H2 subunit A.	0.495
CPNE9	RNASEH2B	ENSTGUP00000008853	ENSTGUP00000037764	Copine family member 9.	Ribonuclease H2 subunit B.	0.554
DCAF1	RNASEH2B	ENSTGUP00000005023	ENSTGUP00000037764	DDB1 and CUL4 associated factor 1.	Ribonuclease H2 subunit B.	0.483
DCAF1	SAMHD1	ENSTGUP00000005023	ENSTGUP00000003394	DDB1 and CUL4 associated factor 1.	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1.	0.944
ENSTGUP00000021082	RNASEH2A	ENSTGUP00000021082	ENSTGUP00000033620	annotation not available	Ribonuclease H2 subunit A.	0.969
ENSTGUP00000021082	RNASEH2B	ENSTGUP00000021082	ENSTGUP00000037764	annotation not available	Ribonuclease H2 subunit B.	0.972
ENSTGUP00000021082	SAMHD1	ENSTGUP00000021082	ENSTGUP00000003394	annotation not available	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1.	0.634
ENSTGUP00000028260	RNASEH2A	ENSTGUP00000028260	ENSTGUP00000033620	annotation not available	Ribonuclease H2 subunit A.	0.495
ENSTGUP00000028260	RNASEH2B	ENSTGUP00000028260	ENSTGUP00000037764	annotation not available	Ribonuclease H2 subunit B.	0.554
RNASEH2A	CPNE2	ENSTGUP00000033620	ENSTGUP00000005314	Ribonuclease H2 subunit A.	Copine 2.	0.495
RNASEH2A	CPNE7	ENSTGUP00000033620	ENSTGUP00000021941	Ribonuclease H2 subunit A.	Copine-7.	0.495
RNASEH2A	CPNE9	ENSTGUP00000033620	ENSTGUP00000008853	Ribonuclease H2 subunit A.	Copine family member 9.	0.495
RNASEH2A	ENSTGUP00000021082	ENSTGUP00000033620	ENSTGUP00000021082	Ribonuclease H2 subunit A.	annotation not available	0.969
RNASEH2A	ENSTGUP00000028260	ENSTGUP00000033620	ENSTGUP00000028260	Ribonuclease H2 subunit A.	annotation not available	0.495
RNASEH2A	RNASEH2B	ENSTGUP00000033620	ENSTGUP00000037764	Ribonuclease H2 subunit A.	Ribonuclease H2 subunit B.	0.996
RNASEH2A	SAMHD1	ENSTGUP00000033620	ENSTGUP00000003394	Ribonuclease H2 subunit A.	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1.	0.642