(13 nodes) Nucleotide-activated protein kinase complex, and Mo25-like network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRKAG2	Protein kinase AMP-activated non-catalytic subunit gamma 2. (568 aa)
	STK11	Serine/threonine kinase 11; Belongs to the protein kinase superfamily. (440 aa)
	CAB39	Calcium binding protein 39. (341 aa)
	PRKAB1	Protein kinase AMP-activated non-catalytic subunit beta 1. (273 aa)
	PRKAA2	Non-specific serine/threonine protein kinase. (552 aa)
	STRADB	Protein kinase domain-containing protein. (416 aa)
	CAB39L	Calcium binding protein 39 like. (334 aa)
	STRADA	STE20 related adaptor alpha. (373 aa)
	ACACA	Acetyl-CoA carboxylase alpha. (2345 aa)
	PRKAG1	5'-AMP-activated protein kinase, regulatory gamma subunit. (296 aa)
	PRKAA1	Non-specific serine/threonine protein kinase. (561 aa)
	PRKAG3	Protein kinase AMP-activated non-catalytic subunit gamma 3. (400 aa)
	PRKAB2	Protein kinase AMP-activated non-catalytic subunit beta 2. (272 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACACA	PRKAA1	ENSTGUP00000022961	ENSTGUP00000033501	Acetyl-CoA carboxylase alpha.	Non-specific serine/threonine protein kinase.	0.926
ACACA	PRKAA2	ENSTGUP00000022961	ENSTGUP00000009883	Acetyl-CoA carboxylase alpha.	Non-specific serine/threonine protein kinase.	0.926
ACACA	PRKAB1	ENSTGUP00000022961	ENSTGUP00000009543	Acetyl-CoA carboxylase alpha.	Protein kinase AMP-activated non-catalytic subunit beta 1.	0.915
ACACA	PRKAB2	ENSTGUP00000022961	ENSTGUP00000034132	Acetyl-CoA carboxylase alpha.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.913
ACACA	PRKAG1	ENSTGUP00000022961	ENSTGUP00000029994	Acetyl-CoA carboxylase alpha.	5'-AMP-activated protein kinase, regulatory gamma subunit.	0.909
ACACA	PRKAG2	ENSTGUP00000022961	ENSTGUP00000000615	Acetyl-CoA carboxylase alpha.	Protein kinase AMP-activated non-catalytic subunit gamma 2.	0.909
ACACA	PRKAG3	ENSTGUP00000022961	ENSTGUP00000033809	Acetyl-CoA carboxylase alpha.	Protein kinase AMP-activated non-catalytic subunit gamma 3.	0.909
CAB39	CAB39L	ENSTGUP00000005573	ENSTGUP00000012527	Calcium binding protein 39.	Calcium binding protein 39 like.	0.909
CAB39	PRKAA1	ENSTGUP00000005573	ENSTGUP00000033501	Calcium binding protein 39.	Non-specific serine/threonine protein kinase.	0.954
CAB39	PRKAA2	ENSTGUP00000005573	ENSTGUP00000009883	Calcium binding protein 39.	Non-specific serine/threonine protein kinase.	0.956
CAB39	PRKAB1	ENSTGUP00000005573	ENSTGUP00000009543	Calcium binding protein 39.	Protein kinase AMP-activated non-catalytic subunit beta 1.	0.476
CAB39	PRKAB2	ENSTGUP00000005573	ENSTGUP00000034132	Calcium binding protein 39.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.453
CAB39	STK11	ENSTGUP00000005573	ENSTGUP00000000924	Calcium binding protein 39.	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	0.979
CAB39	STRADA	ENSTGUP00000005573	ENSTGUP00000021123	Calcium binding protein 39.	STE20 related adaptor alpha.	0.939
CAB39	STRADB	ENSTGUP00000005573	ENSTGUP00000010587	Calcium binding protein 39.	Protein kinase domain-containing protein.	0.939
CAB39L	CAB39	ENSTGUP00000012527	ENSTGUP00000005573	Calcium binding protein 39 like.	Calcium binding protein 39.	0.909
CAB39L	PRKAA1	ENSTGUP00000012527	ENSTGUP00000033501	Calcium binding protein 39 like.	Non-specific serine/threonine protein kinase.	0.954
CAB39L	PRKAA2	ENSTGUP00000012527	ENSTGUP00000009883	Calcium binding protein 39 like.	Non-specific serine/threonine protein kinase.	0.956
CAB39L	PRKAB1	ENSTGUP00000012527	ENSTGUP00000009543	Calcium binding protein 39 like.	Protein kinase AMP-activated non-catalytic subunit beta 1.	0.476
CAB39L	PRKAB2	ENSTGUP00000012527	ENSTGUP00000034132	Calcium binding protein 39 like.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.453