11 items (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HMBS	Hydroxymethylbilane synthase. (350 aa)
	SLC25A38	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the mitochondrial carrier (TC 2.A.29) family. SLC25A38 subfamily. (306 aa)
	ABCB6	ATP binding cassette subfamily B member 6 (Langereis blood group). (840 aa)
	UROS	Uroporphyrinogen III synthase. (269 aa)
	CPOX	Uncharacterized protein. (401 aa)
	ALAD	Uncharacterized protein; Belongs to the ALAD family. (373 aa)
	ENSTGUP00000023416	annotation not available (1178 aa)
	ENDOV	Endonuclease V. (329 aa)
	ENSTGUP00000030322	annotation not available (567 aa)
	FECH	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. (422 aa)
	UROD	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (453 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB6	CPOX	ENSTGUP00000005938	ENSTGUP00000013837	ATP binding cassette subfamily B member 6 (Langereis blood group).	Uncharacterized protein.	0.424
ABCB6	ENSTGUP00000023416	ENSTGUP00000005938	ENSTGUP00000023416	ATP binding cassette subfamily B member 6 (Langereis blood group).	annotation not available	0.574
ABCB6	FECH	ENSTGUP00000005938	ENSTGUP00000032977	ATP binding cassette subfamily B member 6 (Langereis blood group).	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	0.567
ABCB6	SLC25A38	ENSTGUP00000005938	ENSTGUP00000004709	ATP binding cassette subfamily B member 6 (Langereis blood group).	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the mitochondrial carrier (TC 2.A.29) family. SLC25A38 subfamily.	0.552
ABCB6	UROD	ENSTGUP00000005938	ENSTGUP00000033536	ATP binding cassette subfamily B member 6 (Langereis blood group).	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.489
ABCB6	UROS	ENSTGUP00000005938	ENSTGUP00000011834	ATP binding cassette subfamily B member 6 (Langereis blood group).	Uroporphyrinogen III synthase.	0.487
ALAD	CPOX	ENSTGUP00000022682	ENSTGUP00000013837	Uncharacterized protein; Belongs to the ALAD family.	Uncharacterized protein.	0.737
ALAD	ENDOV	ENSTGUP00000022682	ENSTGUP00000026311	Uncharacterized protein; Belongs to the ALAD family.	Endonuclease V.	0.635
ALAD	ENSTGUP00000023416	ENSTGUP00000022682	ENSTGUP00000023416	Uncharacterized protein; Belongs to the ALAD family.	annotation not available	0.751
ALAD	ENSTGUP00000030322	ENSTGUP00000022682	ENSTGUP00000030322	Uncharacterized protein; Belongs to the ALAD family.	annotation not available	0.711
ALAD	FECH	ENSTGUP00000022682	ENSTGUP00000032977	Uncharacterized protein; Belongs to the ALAD family.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	0.745
ALAD	HMBS	ENSTGUP00000022682	ENSTGUP00000000014	Uncharacterized protein; Belongs to the ALAD family.	Hydroxymethylbilane synthase.	0.994
ALAD	SLC25A38	ENSTGUP00000022682	ENSTGUP00000004709	Uncharacterized protein; Belongs to the ALAD family.	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the mitochondrial carrier (TC 2.A.29) family. SLC25A38 subfamily.	0.420
ALAD	UROD	ENSTGUP00000022682	ENSTGUP00000033536	Uncharacterized protein; Belongs to the ALAD family.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.755
ALAD	UROS	ENSTGUP00000022682	ENSTGUP00000011834	Uncharacterized protein; Belongs to the ALAD family.	Uroporphyrinogen III synthase.	0.989
CPOX	ABCB6	ENSTGUP00000013837	ENSTGUP00000005938	Uncharacterized protein.	ATP binding cassette subfamily B member 6 (Langereis blood group).	0.424
CPOX	ALAD	ENSTGUP00000013837	ENSTGUP00000022682	Uncharacterized protein.	Uncharacterized protein; Belongs to the ALAD family.	0.737
CPOX	ENDOV	ENSTGUP00000013837	ENSTGUP00000026311	Uncharacterized protein.	Endonuclease V.	0.909
CPOX	ENSTGUP00000023416	ENSTGUP00000013837	ENSTGUP00000023416	Uncharacterized protein.	annotation not available	0.940
CPOX	ENSTGUP00000030322	ENSTGUP00000013837	ENSTGUP00000030322	Uncharacterized protein.	annotation not available	0.513