17 items (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	YOD1	YOD1 deubiquitinase. (304 aa)
	VCP	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	SPATA5	Spermatogenesis associated 5. (823 aa)
	UBE4B	Ubiquitination factor E4B. (1345 aa)
	ASPSCR1	ASPSCR1 tether for SLC2A4, UBX domain containing. (544 aa)
	UFD1	Ubiquitin recognition factor in ER associated degradation 1. (307 aa)
	UBXN2B	Uncharacterized protein. (340 aa)
	VCPIP1	Valosin containing protein interacting protein 1. (1215 aa)
	UBXN4	UBX domain protein 4. (475 aa)
	FAAP100	Uncharacterized protein. (937 aa)
	UBXN6	UBX domain protein 6. (761 aa)
	UBXN10	UBX domain protein 10. (281 aa)
	UBXN2A	UBX domain protein 2A. (335 aa)
	UBXN7	UBX domain-containing protein 7. (507 aa)
	SVIP	Small VCP/p97-interacting protein. (217 aa)
	NPLOC4	NPL4 homolog, ubiquitin recognition factor. (615 aa)
	NSFL1C	Uncharacterized protein. (440 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASPSCR1	FAAP100	ENSTGUP00000003711	ENSTGUP00000017293	ASPSCR1 tether for SLC2A4, UBX domain containing.	Uncharacterized protein.	0.810
ASPSCR1	NPLOC4	ENSTGUP00000003711	ENSTGUP00000036469	ASPSCR1 tether for SLC2A4, UBX domain containing.	NPL4 homolog, ubiquitin recognition factor.	0.900
ASPSCR1	NSFL1C	ENSTGUP00000003711	ENSTGUP00000037966	ASPSCR1 tether for SLC2A4, UBX domain containing.	Uncharacterized protein.	0.969
ASPSCR1	SPATA5	ENSTGUP00000003711	ENSTGUP00000002095	ASPSCR1 tether for SLC2A4, UBX domain containing.	Spermatogenesis associated 5.	0.777
ASPSCR1	UBXN10	ENSTGUP00000003711	ENSTGUP00000030383	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 10.	0.962
ASPSCR1	UBXN2A	ENSTGUP00000003711	ENSTGUP00000033324	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 2A.	0.963
ASPSCR1	UBXN2B	ENSTGUP00000003711	ENSTGUP00000011467	ASPSCR1 tether for SLC2A4, UBX domain containing.	Uncharacterized protein.	0.968
ASPSCR1	UBXN4	ENSTGUP00000003711	ENSTGUP00000012135	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 4.	0.805
ASPSCR1	UBXN6	ENSTGUP00000003711	ENSTGUP00000027853	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 6.	0.966
ASPSCR1	UBXN7	ENSTGUP00000003711	ENSTGUP00000034389	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain-containing protein 7.	0.994
ASPSCR1	UFD1	ENSTGUP00000003711	ENSTGUP00000008782	ASPSCR1 tether for SLC2A4, UBX domain containing.	Ubiquitin recognition factor in ER associated degradation 1.	0.587
ASPSCR1	VCP	ENSTGUP00000003711	ENSTGUP00000001825	ASPSCR1 tether for SLC2A4, UBX domain containing.	Valosin containing protein; Belongs to the AAA ATPase family.	0.961
ASPSCR1	YOD1	ENSTGUP00000003711	ENSTGUP00000001097	ASPSCR1 tether for SLC2A4, UBX domain containing.	YOD1 deubiquitinase.	0.484
FAAP100	ASPSCR1	ENSTGUP00000017293	ENSTGUP00000003711	Uncharacterized protein.	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.810
FAAP100	NSFL1C	ENSTGUP00000017293	ENSTGUP00000037966	Uncharacterized protein.	Uncharacterized protein.	0.625
FAAP100	SPATA5	ENSTGUP00000017293	ENSTGUP00000002095	Uncharacterized protein.	Spermatogenesis associated 5.	0.853
FAAP100	UBE4B	ENSTGUP00000017293	ENSTGUP00000003684	Uncharacterized protein.	Ubiquitination factor E4B.	0.775
FAAP100	UBXN10	ENSTGUP00000017293	ENSTGUP00000030383	Uncharacterized protein.	UBX domain protein 10.	0.682
FAAP100	UBXN2A	ENSTGUP00000017293	ENSTGUP00000033324	Uncharacterized protein.	UBX domain protein 2A.	0.452
FAAP100	UBXN2B	ENSTGUP00000017293	ENSTGUP00000011467	Uncharacterized protein.	Uncharacterized protein.	0.625