(37 nodes) Small-subunit processome, and Positive regulation of rRNA processing network (Taeniopygia guttata)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	UTP11	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
	UTP3	UTP3 small subunit processome component. (513 aa)
	NOL6	Nucleolar protein 6. (1131 aa)
	UTP6	UTP6 small subunit processome component. (597 aa)
	RCL1	RNA terminal phosphate cyclase like 1. (490 aa)
	UTP14A	Uncharacterized protein. (819 aa)
	WDR43	WD repeat domain 43. (648 aa)
	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (750 aa)
	UTP15	UTP15 small subunit processome component. (520 aa)
	BMS1	Bms1-type G domain-containing protein. (1314 aa)
	RRP9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (540 aa)
	AATF	Uncharacterized protein. (557 aa)
	NOC4L	CBF domain-containing protein. (516 aa)
	UTP20	DRIM domain-containing protein. (2796 aa)
	UTP18	UTP18 small subunit processome component. (569 aa)
	NOP58	NOP58 ribonucleoprotein. (527 aa)
	PDCD11	Uncharacterized protein. (1763 aa)
	NOP14	NOP14 nucleolar protein. (867 aa)
	WDR75	WD repeat domain 75. (878 aa)
	DCAF13	DDB1 and CUL4 associated factor 13. (445 aa)
	NOL10	Nucleolar protein 10. (688 aa)
	IMP3	IMP U3 small nucleolar ribonucleoprotein 3. (185 aa)
	EMG1	EMG1 N1-specific pseudouridine methyltransferase. (452 aa)
	WDR3	WD repeat domain 3. (939 aa)
	UTP4	UTP4 small subunit processome component. (686 aa)
	ENSTGUP00000019885	annotation not available (464 aa)
	WDR36	WD repeat domain 36. (960 aa)
	DNTTIP2	Fcf2 domain-containing protein. (778 aa)
	NOP56	Nucleolar protein 56. (550 aa)
	ENSTGUP00000026984	annotation not available (387 aa)
	IMP4	U3 small nucleolar ribonucleoprotein protein IMP4. (594 aa)
	ENSTGUP00000031805	annotation not available (773 aa)
	HEATR1	HEAT repeat containing 1. (2009 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	FCF1	FCF1 rRNA-processing protein. (198 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1023 aa)
	RRP7A	Ribosomal RNA processing 7 homolog A. (275 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AATF	BMS1	ENSTGUP00000008311	ENSTGUP00000006501	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.996
AATF	DCAF13	ENSTGUP00000008311	ENSTGUP00000012523	Uncharacterized protein.	DDB1 and CUL4 associated factor 13.	0.995
AATF	DNTTIP2	ENSTGUP00000008311	ENSTGUP00000020448	Uncharacterized protein.	Fcf2 domain-containing protein.	0.992
AATF	EMG1	ENSTGUP00000008311	ENSTGUP00000013664	Uncharacterized protein.	EMG1 N1-specific pseudouridine methyltransferase.	0.992
AATF	ENSTGUP00000019885	ENSTGUP00000008311	ENSTGUP00000019885	Uncharacterized protein.	annotation not available	0.858
AATF	ENSTGUP00000026984	ENSTGUP00000008311	ENSTGUP00000026984	Uncharacterized protein.	annotation not available	0.858
AATF	ENSTGUP00000031805	ENSTGUP00000008311	ENSTGUP00000031805	Uncharacterized protein.	annotation not available	0.996
AATF	FCF1	ENSTGUP00000008311	ENSTGUP00000034255	Uncharacterized protein.	FCF1 rRNA-processing protein.	0.991
AATF	HEATR1	ENSTGUP00000008311	ENSTGUP00000032334	Uncharacterized protein.	HEAT repeat containing 1.	0.990
AATF	IMP3	ENSTGUP00000008311	ENSTGUP00000013619	Uncharacterized protein.	IMP U3 small nucleolar ribonucleoprotein 3.	0.987
AATF	IMP4	ENSTGUP00000008311	ENSTGUP00000031417	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein IMP4.	0.993
AATF	MPHOSPH10	ENSTGUP00000008311	ENSTGUP00000005757	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.990
AATF	NAT10	ENSTGUP00000008311	ENSTGUP00000035068	Uncharacterized protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.998
AATF	NOC4L	ENSTGUP00000008311	ENSTGUP00000008374	Uncharacterized protein.	CBF domain-containing protein.	0.987
AATF	NOL10	ENSTGUP00000008311	ENSTGUP00000013440	Uncharacterized protein.	Nucleolar protein 10.	0.997
AATF	NOL6	ENSTGUP00000008311	ENSTGUP00000001730	Uncharacterized protein.	Nucleolar protein 6.	0.993
AATF	NOP14	ENSTGUP00000008311	ENSTGUP00000010795	Uncharacterized protein.	NOP14 nucleolar protein.	0.998
AATF	NOP56	ENSTGUP00000008311	ENSTGUP00000026526	Uncharacterized protein.	Nucleolar protein 56.	0.990
AATF	NOP58	ENSTGUP00000008311	ENSTGUP00000010456	Uncharacterized protein.	NOP58 ribonucleoprotein.	0.995
AATF	PDCD11	ENSTGUP00000008311	ENSTGUP00000010637	Uncharacterized protein.	Uncharacterized protein.	0.992