STRINGSTRING
H0YP70_TAEGU H0YP70_TAEGU CACTIN CACTIN SF3A2 SF3A2 DDX41 DDX41 SNRNP40 SNRNP40 RBM22 RBM22 HNRNPR HNRNPR YJU2 YJU2 HNRNPM HNRNPM BCAS2 BCAS2 UPF1 UPF1 PPIE PPIE PPIL1 PPIL1 SMU1 SMU1 SF3A3 SF3A3 SNIP1 SNIP1 ZMAT2 ZMAT2 SNRPC SNRPC RBM17 RBM17 RBMX RBMX EIF4A3 EIF4A3 PRPF4B PRPF4B PRPF18 PRPF18 PRPF4 PRPF4 CWC27 CWC27 TRA2A TRA2A PPWD1 PPWD1 DHX8 DHX8 CWC25 CWC25 ADAR ADAR LOC115490540 LOC115490540 RBM8A RBM8A C9orf78 C9orf78 PRPF3 PRPF3 PRPF38B PRPF38B DDX5 DDX5 CHUK CHUK RNPC3 RNPC3 RBMX2 RBMX2 SNRNP35 SNRNP35 SNRPB SNRPB PRPF8 PRPF8 ZCRB1 ZCRB1 SF3B3 SF3B3 CTNNBL1 CTNNBL1 RBM41 RBM41 H0Z9J6_TAEGU H0Z9J6_TAEGU H0Z9M7_TAEGU H0Z9M7_TAEGU MYEF2 MYEF2 PRPF6 PRPF6 BUD31 BUD31 CRNKL1 CRNKL1 TFIP11 TFIP11 ZRSR2 ZRSR2 DHX38 DHX38 LSM3 LSM3 PPIL2 PPIL2 ESS2 ESS2 SNRPA1 SNRPA1 PRPF38A PRPF38A PDCD7 PDCD7 MAGOH MAGOH WBP11 WBP11 CWC22 CWC22 GPATCH1 GPATCH1 LOC100219615 LOC100219615 NCL NCL SNRPD3 SNRPD3 MFAP1 MFAP1 PPIL3 PPIL3 EIF4A2 EIF4A2 SF3A1 SF3A1 SMNDC1 SMNDC1 SF3B5 SF3B5 DHX32 DHX32 H0ZMM2_TAEGU H0ZMM2_TAEGU GEMIN2 GEMIN2 PNN PNN CDC40 CDC40 SYNCRIP SYNCRIP CWF19L2 CWF19L2 PHF5A PHF5A SNRPF SNRPF ENSTGUP00000021807 ENSTGUP00000021807 SNRPA SNRPA HTATSF1 HTATSF1 LUC7L LUC7L H1A2P2_TAEGU H1A2P2_TAEGU SF3B1 SF3B1 CIRBP CIRBP SYF2 SYF2 SNRPD2 SNRPD2 USP39 USP39 LOC115491749 LOC115491749 PPIH PPIH H1A245_TAEGU H1A245_TAEGU LUC7L3 LUC7L3 SUGP1 SUGP1 CDC5L CDC5L PRPF39 PRPF39 SF3B6 SF3B6 CASC3 CASC3 LGALS3 LGALS3 ENSTGUP00000037847 ENSTGUP00000037847 CCDC12 CCDC12 DQX1 DQX1 PLRG1 PLRG1 CWC15 CWC15 ENSTGUP00000036226 ENSTGUP00000036226 SNRNP70 SNRNP70 MTREX MTREX LOC105760436 LOC105760436 SNRPG SNRPG PRPF19 PRPF19 DHX16 DHX16 WDR25 WDR25 ENSTGUP00000033882 ENSTGUP00000033882 SNRPB2 SNRPB2 ZNF830 ZNF830 SNU13 SNU13 SNRNP25 SNRNP25 LSM8 LSM8 H0YSB3_TAEGU H0YSB3_TAEGU SF3B2 SF3B2 AAR2 AAR2 DHX35 DHX35 LSM5 LSM5 SLU7 SLU7 ENSTGUP00000031729 ENSTGUP00000031729 AQR AQR DHX15 DHX15 RNF113A2 RNF113A2 LOC100224409 LOC100224409 PPP1R8 PPP1R8 LSM6 LSM6 TXNL4B TXNL4B WDR83 WDR83 RBM44 RBM44 ISY1 ISY1 CWF19L1 CWF19L1 BUD13 BUD13 SNRNP48 SNRNP48 LOC115492235 LOC115492235 SNRPE SNRPE SNW1 SNW1 ZMAT5 ZMAT5 HNRNPK HNRNPK ENSTGUP00000028792 ENSTGUP00000028792 LSM4-2 LSM4-2 DDX23 DDX23 PRPF40A PRPF40A PTBP2 PTBP2 ENSTGUP00000027450 ENSTGUP00000027450 WBP4 WBP4 LOC105759991 LOC105759991 LOC115491756 LOC115491756 LSM4 LSM4 XAB2 XAB2 ENSTGUP00000026626 ENSTGUP00000026626 ENSTGUP00000026221 ENSTGUP00000026221 ENSTGUP00000026202 ENSTGUP00000026202 ENSTGUP00000026168 ENSTGUP00000026168 ENSTGUP00000025925 ENSTGUP00000025925 SART1 SART1 TRA2B TRA2B ENSTGUP00000025171 ENSTGUP00000025171 H1A2Q8_TAEGU H1A2Q8_TAEGU SF3B4 SF3B4 U2AF1 U2AF1 DNAJC17 DNAJC17 TXNL4A TXNL4A U2AF2 U2AF2 SNRPD1 SNRPD1 ENSTGUP00000023979 ENSTGUP00000023979 LOC115492709 LOC115492709 EFTUD2 EFTUD2 SRSF2 SRSF2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H0YP70_TAEGUBACK domain-containing protein. (309 aa)
CACTINCactin, spliceosome C complex subunit. (771 aa)
SF3A2Splicing factor 3a subunit 2. (310 aa)
DDX41DEAD-box helicase 41. (615 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (384 aa)
RBM22RNA binding motif protein 22. (420 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (693 aa)
YJU2YJU2 splicing factor homolog. (321 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (867 aa)
BCAS2Putative breast carcinoma amplified sequence 2. (226 aa)
UPF1UPF1 RNA helicase and ATPase. (1117 aa)
PPIEPeptidylprolyl isomerase E. (301 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
SF3A3Splicing factor 3a subunit 3. (501 aa)
SNIP1Smad nuclear interacting protein 1. (412 aa)
ZMAT2Zinc finger matrin-type 2. (259 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
RBM17RNA binding motif protein 17. (399 aa)
RBMXRRM domain-containing protein. (385 aa)
EIF4A3Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the [...] (410 aa)
PRPF4BPre-mRNA processing factor 4B. (1094 aa)
PRPF18SFM domain-containing protein. (351 aa)
PRPF4Pre-mRNA processing factor 4. (562 aa)
CWC27CWC27 spliceosome associated cyclophilin. (477 aa)
TRA2ATransformer 2 alpha homolog. (276 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat containing 1. (628 aa)
DHX8DEAH-box helicase 8. (1192 aa)
CWC25CWC25 spliceosome associated protein homolog. (396 aa)
ADARAdenosine deaminase RNA specific. (1169 aa)
LOC115490540Small nuclear ribonucleoprotein G. (76 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (199 aa)
C9orf78Chromosome 9 open reading frame 78. (289 aa)
PRPF3Pre-mRNA processing factor 3. (684 aa)
PRPF38BUncharacterized protein. (546 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (781 aa)
CHUKProtein kinase domain-containing protein. (762 aa)
RNPC3RRM domain-containing protein. (534 aa)
RBMX2RNA binding motif protein X-linked 2. (315 aa)
SNRNP35RRM domain-containing protein. (263 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
PRPF8MPN domain-containing protein. (2335 aa)
ZCRB1Zinc finger CCHC-type and RNA binding motif containing 1. (216 aa)
SF3B3Splicing factor 3b subunit 3. (1171 aa)
CTNNBL1Catenin beta like 1. (586 aa)
RBM41RRM domain-containing protein. (419 aa)
H0Z9J6_TAEGUUncharacterized protein. (256 aa)
H0Z9M7_TAEGUUncharacterized protein. (282 aa)
MYEF2Myelin expression factor 2. (540 aa)
PRPF6Pre-mRNA processing factor 6. (941 aa)
BUD31Uncharacterized protein. (144 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (686 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (827 aa)
ZRSR2Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2. (415 aa)
DHX38DEAH-box helicase 38. (1230 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
PPIL2Peptidylprolyl isomerase like 2. (521 aa)
ESS2Ess-2 splicing factor homolog. (478 aa)
SNRPA1LRRcap domain-containing protein. (255 aa)
PRPF38APre-mRNA processing factor 38A. (312 aa)
PDCD7Programmed cell death 7. (431 aa)
MAGOHUncharacterized protein. (146 aa)
WBP11Uncharacterized protein. (649 aa)
CWC22MI domain-containing protein. (918 aa)
GPATCH1G-patch domain containing 1. (936 aa)
LOC100219615Uncharacterized protein. (398 aa)
NCLUncharacterized protein. (690 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
MFAP1Microfibril associated protein 1. (440 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
EIF4A2Eukaryotic translation initiation factor 4A2; Belongs to the DEAD box helicase family. (408 aa)
SF3A1Splicing factor 3a subunit 1. (790 aa)
SMNDC1Survival motor neuron domain containing 1. (238 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
DHX32HA2 domain-containing protein. (359 aa)
H0ZMM2_TAEGUUncharacterized protein. (266 aa)
GEMIN2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (263 aa)
PNNPinin, desmosome associated protein. (658 aa)
CDC40Cell division cycle 40. (581 aa)
SYNCRIPHeterogeneous nuclear ribonucleoprotein Q isoform X1. (562 aa)
CWF19L2Uncharacterized protein. (902 aa)
PHF5APHD finger protein 5A. (121 aa)
SNRPFUncharacterized protein. (132 aa)
ENSTGUP00000021807annotation not available (274 aa)
SNRPAU1 small nuclear ribonucleoprotein A. (281 aa)
HTATSF1HIV-1 Tat specific factor 1. (451 aa)
LUC7LLUC7 like. (370 aa)
H1A2P2_TAEGURRM domain-containing protein. (232 aa)
SF3B1Splicing factor 3b subunit 1. (1301 aa)
CIRBPRRM domain-containing protein. (204 aa)
SYF2Pre-mRNA-splicing factor SYF2. (320 aa)
SNRPD2Small nuclear ribonucleoprotein D2 polypeptide. (54 aa)
USP39U4/U6.U5 tri-snRNP-associated protein 2. (651 aa)
LOC115491749U4/U6 small nuclear ribonucleoprotein Prp31. (741 aa)
PPIHPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
H1A245_TAEGURRM domain-containing protein. (188 aa)
LUC7L3Uncharacterized protein. (467 aa)
SUGP1SURP motif domain-containing protein. (919 aa)
CDC5LCell division cycle 5 like. (803 aa)
PRPF39Pre-mRNA processing factor 39. (666 aa)
SF3B6Splicing factor 3b subunit 6. (161 aa)
CASC3CASC3 exon junction complex subunit. (723 aa)
LGALS3Galectin. (303 aa)
ENSTGUP00000037847annotation not available (501 aa)
CCDC12Coiled-coil domain containing 12. (220 aa)
DQX1ATP-dependent RNA helicase DQX1 isoform X2. (744 aa)
PLRG1WD_REPEATS_REGION domain-containing protein. (669 aa)
CWC15Uncharacterized protein. (230 aa)
ENSTGUP00000036226annotation not available (112 aa)
SNRNP70U1 small nuclear ribonucleoprotein 70 kDa-like. (428 aa)
MTREXMtr4 exosome RNA helicase. (1035 aa)
LOC105760436pre-mRNA-splicing factor SLU7-like. (580 aa)
SNRPGTaeniopygia guttata small nuclear ribonucleoprotein polypeptide G (SNRPG), mRNA. (76 aa)
PRPF19Pre-mRNA processing factor 19. (635 aa)
DHX16Helicase C-terminal domain-containing protein. (1011 aa)
WDR25WD repeat domain 25. (503 aa)
ENSTGUP00000033882E3 ubiquitin-protein ligase RNF113A-like. (330 aa)
SNRPB2Uncharacterized protein. (225 aa)
ZNF830Zinc finger protein 830. (431 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
SNRNP25U11/U12 small nuclear ribonucleoprotein 25 kDa protein. (150 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (109 aa)
H0YSB3_TAEGUPWI domain-containing protein. (94 aa)
SF3B2Splicing factor 3b subunit 2. (555 aa)
AAR2AAR2 splicing factor. (381 aa)
DHX35Uncharacterized protein. (712 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (200 aa)
SLU7SLU7 homolog, splicing factor. (580 aa)
ENSTGUP00000031729Splicing factor YJU2-like. (404 aa)
AQRAquarius intron-binding spliceosomal factor. (1466 aa)
DHX15DEAH-box helicase 15. (765 aa)
RNF113A2Uncharacterized protein. (347 aa)
LOC100224409Uncharacterized protein. (2136 aa)
PPP1R8Protein phosphatase 1 regulatory subunit 8. (388 aa)
LSM6Putative LSM6 homolog U6 small nuclear RNA associated. (236 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
WDR83WD repeat domain 83. (316 aa)
RBM44Uncharacterized protein. (618 aa)
ISY1Uncharacterized protein. (279 aa)
CWF19L1CWF19-like protein 1 isoform X1. (538 aa)
BUD13Uncharacterized protein. (619 aa)
SNRNP48CHHC U11-48K-type domain-containing protein. (372 aa)
LOC115492235pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like. (1090 aa)
SNRPESmall nuclear ribonucleoprotein polypeptide E. (169 aa)
SNW1SNW domain containing 1. (538 aa)
ZMAT5Zinc finger matrin-type 5. (260 aa)
HNRNPKHeterogeneous nuclear ribonucleoprotein K. (432 aa)
ENSTGUP00000028792annotation not available (454 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (150 aa)
DDX23Probable ATP-dependent RNA helicase DDX23 isoform X1. (815 aa)
PRPF40APre-mRNA processing factor 40 homolog A. (855 aa)
PTBP2Polypyrimidine tract binding protein 2. (564 aa)
ENSTGUP00000027450annotation not available (251 aa)
WBP4WW domain binding protein 4. (389 aa)
LOC105759991Helicase_PWI domain-containing protein. (2130 aa)
LOC115491756Coiled-coil domain-containing protein 130-like. (442 aa)
LSM4LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated. (142 aa)
XAB2Pre-mRNA-splicing factor SYF1. (899 aa)
ENSTGUP00000026626annotation not available (795 aa)
ENSTGUP00000026221annotation not available (299 aa)
ENSTGUP00000026202annotation not available (290 aa)
ENSTGUP00000026168annotation not available (104 aa)
ENSTGUP00000025925annotation not available (139 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (797 aa)
TRA2BRRM domain-containing protein. (291 aa)
ENSTGUP00000025171annotation not available (360 aa)
H1A2Q8_TAEGURRM domain-containing protein. (144 aa)
SF3B4Splicing factor 3b subunit 4. (690 aa)
U2AF1Putative U2 snRNP auxiliary factor small subunit variant 1. (270 aa)
DNAJC17Uncharacterized protein. (369 aa)
TXNL4AU5 snRNP protein, DIM1 family. (341 aa)
U2AF2U2 small nuclear RNA auxiliary factor 2. (478 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
ENSTGUP00000023979annotation not available (329 aa)
LOC115492709Eukaryotic initiation factor 4A-I. (674 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (972 aa)
SRSF2RRM domain-containing protein. (221 aa)
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
Server load: low (34%) [HD]