26 items (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RIMS2	Uncharacterized protein. (1488 aa)
	SYT12	Synaptotagmin 12. (472 aa)
	CADPS	Uncharacterized protein. (1355 aa)
	SYT3	Uncharacterized protein. (529 aa)
	RAPGEF4	Rap guanine nucleotide exchange factor 4. (1026 aa)
	RIMS1	Regulating synaptic membrane exocytosis 1. (1606 aa)
	H0YPK2_TAEGU	Uncharacterized protein. (1716 aa)
	LOC105760438	Vesicle associated membrane protein 7; Belongs to the synaptobrevin family. (220 aa)
	SYT9	Uncharacterized protein. (519 aa)
	LOC100217898	Vesicle-associated membrane protein 7. (278 aa)
	SDF4	Stromal cell derived factor 4. (348 aa)
	CADPS2	Uncharacterized protein. (1301 aa)
	SYT13	Synaptotagmin 13. (431 aa)
	SYT11	Synaptotagmin 11. (484 aa)
	SYT10	Synaptotagmin 10. (522 aa)
	SYT17	Synaptotagmin 17. (474 aa)
	VAMP3	V-SNARE coiled-coil homology domain-containing protein. (393 aa)
	UNC13B	Unc-13 homolog B. (1625 aa)
	SYT2	Synaptotagmin 2. (415 aa)
	SYT1	Synaptotagmin I. (425 aa)
	UNC13C	Unc-13 homolog C. (2206 aa)
	SYT7	Synaptotagmin 7. (684 aa)
	LOC100226015	Uncharacterized protein. (536 aa)
	SYT6	Synaptotagmin 6. (520 aa)
	RIMS3	Regulating synaptic membrane exocytosis 3. (274 aa)
	SYT4	Uncharacterized protein. (571 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CADPS	RIMS2	ENSTGUP00000029191	ENSTGUP00000033110	Uncharacterized protein.	Uncharacterized protein.	0.555
CADPS2	RIMS2	ENSTGUP00000024447	ENSTGUP00000033110	Uncharacterized protein.	Uncharacterized protein.	0.555
H0YPK2_TAEGU	RIMS1	ENSTGUP00000025839	ENSTGUP00000026348	Uncharacterized protein.	Regulating synaptic membrane exocytosis 1.	0.712
H0YPK2_TAEGU	RIMS2	ENSTGUP00000025839	ENSTGUP00000033110	Uncharacterized protein.	Uncharacterized protein.	0.999
H0YPK2_TAEGU	RIMS3	ENSTGUP00000025839	ENSTGUP00000036354	Uncharacterized protein.	Regulating synaptic membrane exocytosis 3.	0.712
H0YPK2_TAEGU	SYT1	ENSTGUP00000025839	ENSTGUP00000007815	Uncharacterized protein.	Synaptotagmin I.	0.605
H0YPK2_TAEGU	SYT2	ENSTGUP00000025839	ENSTGUP00000001345	Uncharacterized protein.	Synaptotagmin 2.	0.605
H0YPK2_TAEGU	VAMP3	ENSTGUP00000025839	ENSTGUP00000002632	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.450
LOC100217898	SYT1	ENSTGUP00000024571	ENSTGUP00000007815	Vesicle-associated membrane protein 7.	Synaptotagmin I.	0.546
LOC100217898	SYT11	ENSTGUP00000024571	ENSTGUP00000017690	Vesicle-associated membrane protein 7.	Synaptotagmin 11.	0.511
LOC100217898	SYT2	ENSTGUP00000024571	ENSTGUP00000001345	Vesicle-associated membrane protein 7.	Synaptotagmin 2.	0.528
LOC100217898	SYT4	ENSTGUP00000024571	ENSTGUP00000035340	Vesicle-associated membrane protein 7.	Uncharacterized protein.	0.535
LOC100217898	SYT7	ENSTGUP00000024571	ENSTGUP00000006740	Vesicle-associated membrane protein 7.	Synaptotagmin 7.	0.577
LOC100217898	VAMP3	ENSTGUP00000024571	ENSTGUP00000002632	Vesicle-associated membrane protein 7.	V-SNARE coiled-coil homology domain-containing protein.	0.705
LOC100226015	RIMS2	ENSTGUP00000005972	ENSTGUP00000033110	Uncharacterized protein.	Uncharacterized protein.	0.613
LOC105760438	SYT1	ENSTGUP00000005621	ENSTGUP00000007815	Vesicle associated membrane protein 7; Belongs to the synaptobrevin family.	Synaptotagmin I.	0.546
LOC105760438	SYT11	ENSTGUP00000005621	ENSTGUP00000017690	Vesicle associated membrane protein 7; Belongs to the synaptobrevin family.	Synaptotagmin 11.	0.511
LOC105760438	SYT2	ENSTGUP00000005621	ENSTGUP00000001345	Vesicle associated membrane protein 7; Belongs to the synaptobrevin family.	Synaptotagmin 2.	0.528
LOC105760438	SYT4	ENSTGUP00000005621	ENSTGUP00000035340	Vesicle associated membrane protein 7; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.535
LOC105760438	SYT7	ENSTGUP00000005621	ENSTGUP00000006740	Vesicle associated membrane protein 7; Belongs to the synaptobrevin family.	Synaptotagmin 7.	0.577