(73 nodes) Syntaxin binding network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H0ZXN7_TAEGU	Ion_trans domain-containing protein. (723 aa)
	LOC100227684	Transmembrane emp24 domain-containing protein 4. (222 aa)
	STX6	Syntaxin 6; Belongs to the syntaxin family. (359 aa)
	CPLX4	Complexin 4. (160 aa)
	ENSTGUP00000018644	annotation not available (647 aa)
	CPLX2	Complexin-1/2. (125 aa)
	STXBP3	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (594 aa)
	LOC100218415-2	Complexin-3-like. (157 aa)
	LRRK2	Leucine rich repeat kinase 2. (2509 aa)
	SCFD2	Uncharacterized protein. (650 aa)
	GOLGA2	Uncharacterized protein. (1046 aa)
	ENSTGUP00000022252	annotation not available (149 aa)
	STX16	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (326 aa)
	H0ZTT1_TAEGU	Arb2 domain-containing protein. (194 aa)
	VAMP3	V-SNARE coiled-coil homology domain-containing protein. (393 aa)
	VPS54	VPS54 subunit of GARP complex. (969 aa)
	LOC100218415	Complexin 3. (157 aa)
	SYT9	Uncharacterized protein. (519 aa)
	SNAP25	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (211 aa)
	SYT7	Synaptotagmin 7. (684 aa)
	UNC13C	Unc-13 homolog C. (2206 aa)
	SYT1	Synaptotagmin I. (425 aa)
	HECTD3	Uncharacterized protein. (847 aa)
	TPCN1	Two pore segment channel 1. (817 aa)
	SYT8	Synaptotagmin 8. (393 aa)
	SYT17	Synaptotagmin 17. (474 aa)
	LOC100231047	GOLD domain-containing protein. (217 aa)
	SNAP47	Synaptosome associated protein 47. (506 aa)
	VPS11	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (968 aa)
	STXBP5L	Syntaxin binding protein 5 like. (1266 aa)
	SNAP29	t-SNARE coiled-coil homology domain-containing protein. (249 aa)
	PTPN2	Tyrosine-protein phosphatase non-receptor type. (420 aa)
	SNPH	Syntaphilin. (655 aa)
	ENSTGUP00000024853	annotation not available (312 aa)
	TXLNA	Taxilin alpha. (542 aa)
	TRARG1	Trafficking regulator of GLUT4 1. (176 aa)
	H0YPK2_TAEGU	Uncharacterized protein. (1716 aa)
	VAMP4	Vesicle associated membrane protein 4. (64 aa)
	STXBP4	Syntaxin binding protein 4. (723 aa)
	CPLX1	Complexin 1. (164 aa)
	LOC100232098	V-SNARE coiled-coil homology domain-containing protein. (121 aa)
	VPS52	VPS52 subunit of GARP complex. (685 aa)
	SYT3	Uncharacterized protein. (529 aa)
	TMED10	Transmembrane p24 trafficking protein 10. (223 aa)
	ENSTGUP00000028831	annotation not available (350 aa)
	ENSTGUP00000029556	annotation not available (253 aa)
	SYT12	Synaptotagmin 12. (472 aa)
	VAMP8	Vesicle-associated membrane protein 8. (75 aa)
	VAMP1	Vesicle associated membrane protein 1. (134 aa)
	NSF	N-ethylmaleimide sensitive factor, vesicle fusing ATPase. (778 aa)
	STX8	Syntaxin 8. (275 aa)
	NAPB	NSF attachment protein beta. (303 aa)
	VPS18	VPS18 core subunit of CORVET and HOPS complexes. (906 aa)
	SNAP23	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (219 aa)
	ENSTGUP00000037461	annotation not available (203 aa)
	TXLNG	Taxilin gamma. (487 aa)
	STXBP1	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (715 aa)
	SYT6	Synaptotagmin 6. (520 aa)
	LOC100227684-2	Transmembrane p24 trafficking protein 4. (221 aa)
	ENSTGUP00000036067	annotation not available (399 aa)
	NAPG	NSF attachment protein gamma. (314 aa)
	FAM172A	Family with sequence similarity 172 member A. (400 aa)
	ENSTGUP00000032702	annotation not available (579 aa)
	ENSTGUP00000033185	Alpha-soluble NSF attachment protein isoform X1. (472 aa)
	SYT2	Synaptotagmin 2. (415 aa)
	UNC13B	Unc-13 homolog B. (1625 aa)
	STXBP5	Syntaxin binding protein 5. (1150 aa)
	TXLNB	Taxilin beta. (684 aa)
	SYT10	Synaptotagmin 10. (522 aa)
	SCFD1	Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family. (632 aa)
	SYBU	Syntabulin. (656 aa)
	ENSTGUP00000013733	annotation not available (113 aa)
	ENSTGUP00000014028	annotation not available (150 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPLX1	ENSTGUP00000013733	ENSTGUP00000026147	ENSTGUP00000013733	Complexin 1.	annotation not available	0.640
CPLX1	ENSTGUP00000028831	ENSTGUP00000026147	ENSTGUP00000028831	Complexin 1.	annotation not available	0.640
CPLX1	LOC100232098	ENSTGUP00000026147	ENSTGUP00000027713	Complexin 1.	V-SNARE coiled-coil homology domain-containing protein.	0.640
CPLX1	SNAP23	ENSTGUP00000026147	ENSTGUP00000038044	Complexin 1.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.661
CPLX1	SNAP25	ENSTGUP00000026147	ENSTGUP00000006316	Complexin 1.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.945
CPLX1	SNAP29	ENSTGUP00000026147	ENSTGUP00000034568	Complexin 1.	t-SNARE coiled-coil homology domain-containing protein.	0.661
CPLX1	SNAP47	ENSTGUP00000026147	ENSTGUP00000000222	Complexin 1.	Synaptosome associated protein 47.	0.661
CPLX1	STXBP1	ENSTGUP00000026147	ENSTGUP00000037201	Complexin 1.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.707
CPLX1	STXBP3	ENSTGUP00000026147	ENSTGUP00000020433	Complexin 1.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.589
CPLX1	SYT1	ENSTGUP00000026147	ENSTGUP00000007815	Complexin 1.	Synaptotagmin I.	0.685
CPLX1	SYT2	ENSTGUP00000026147	ENSTGUP00000001345	Complexin 1.	Synaptotagmin 2.	0.685
CPLX1	SYT7	ENSTGUP00000026147	ENSTGUP00000006740	Complexin 1.	Synaptotagmin 7.	0.467
CPLX1	VAMP1	ENSTGUP00000026147	ENSTGUP00000030157	Complexin 1.	Vesicle associated membrane protein 1.	0.640
CPLX1	VAMP3	ENSTGUP00000026147	ENSTGUP00000002632	Complexin 1.	V-SNARE coiled-coil homology domain-containing protein.	0.724
CPLX1	VAMP4	ENSTGUP00000026147	ENSTGUP00000025954	Complexin 1.	Vesicle associated membrane protein 4.	0.421
CPLX1	VAMP8	ENSTGUP00000026147	ENSTGUP00000029984	Complexin 1.	Vesicle-associated membrane protein 8.	0.421
CPLX2	H0YPK2_TAEGU	ENSTGUP00000018647	ENSTGUP00000025839	Complexin-1/2.	Uncharacterized protein.	0.543
CPLX2	SNAP23	ENSTGUP00000018647	ENSTGUP00000038044	Complexin-1/2.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.538
CPLX2	SNAP25	ENSTGUP00000018647	ENSTGUP00000006316	Complexin-1/2.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.547
CPLX2	SNAP29	ENSTGUP00000018647	ENSTGUP00000034568	Complexin-1/2.	t-SNARE coiled-coil homology domain-containing protein.	0.538