85 items (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFSWAP	Splicing factor SWAP. (974 aa)
	RBM39	RNA binding motif protein 39. (518 aa)
	LOC115491440	Zinc finger CCCH domain-containing protein 10. (396 aa)
	NOVA1	NOVA alternative splicing regulator 1. (450 aa)
	LOC100218449	Poly(U) binding splicing factor 60. (529 aa)
	PUF60	Uncharacterized protein. (506 aa)
	LARP7	La ribonucleoprotein domain family member 7. (590 aa)
	CIRBP	RRM domain-containing protein. (204 aa)
	RBM11	Splicing regulator RBM11 isoform X3. (158 aa)
	MBNL1	Muscleblind like splicing regulator 1. (421 aa)
	C1QBP	Complement C1q binding protein. (287 aa)
	RBM24	RNA binding motif protein 24. (280 aa)
	RBFOX1	RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events. (413 aa)
	QKI	QKI, KH domain containing RNA binding. (423 aa)
	RAVER2	Ribonucleoprotein PTB-binding 2. (629 aa)
	PTBP1	Polypyrimidine tract binding protein 1. (566 aa)
	ENSTGUP00000022741	annotation not available (138 aa)
	CELF3	Uncharacterized protein. (375 aa)
	SRSF2	RRM domain-containing protein. (221 aa)
	REST	RE1 silencing transcription factor. (893 aa)
	ENSTGUP00000023625	annotation not available (121 aa)
	ENSTGUP00000023662	annotation not available (104 aa)
	U2AF2	U2 small nuclear RNA auxiliary factor 2. (478 aa)
	ENSTGUP00000024904	annotation not available (141 aa)
	SRSF7	Uncharacterized protein. (421 aa)
	SF3B4	Splicing factor 3b subunit 4. (690 aa)
	TRA2B	RRM domain-containing protein. (291 aa)
	ENSTGUP00000026696	annotation not available (185 aa)
	DMC1	DEAD-box helicase 17; Belongs to the DEAD box helicase family. (960 aa)
	RBM6	RNA binding motif protein 6. (921 aa)
	ENSTGUP00000028459	annotation not available (169 aa)
	SON	Protein SON isoform X2. (3184 aa)
	H0YQE2_TAEGU	Uncharacterized protein. (307 aa)
	RBFOX3	RNA binding fox-1 homolog 3. (592 aa)
	MBNL3	Muscleblind like splicing regulator 3. (436 aa)
	CELF1	CUGBP Elav-like family member 1. (532 aa)
	HNRNPK	Heterogeneous nuclear ribonucleoprotein K. (432 aa)
	SNW1	SNW domain containing 1. (538 aa)
	ENSTGUP00000002155	annotation not available (261 aa)
	RBMX	RRM domain-containing protein. (385 aa)
	EIF4A3	Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the [...] (410 aa)
	TRA2A	Transformer 2 alpha homolog. (276 aa)
	RBM8A	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (199 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (781 aa)
	RBM15B	RNA binding motif protein 15B. (916 aa)
	RBM5	RNA binding motif protein 5. (593 aa)
	NSRP1	Nuclear speckle splicing regulatory protein 1. (563 aa)
	JMJD6	Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (414 aa)
	MYOD1	Myogenic factor. (294 aa)
	SRRM4	Serine/arginine repetitive matrix 4. (599 aa)
	NCL	Uncharacterized protein. (690 aa)
	RAVER2-2	Ribonucleoprotein, PTB binding 2. (699 aa)
	FXR1	FMR1 autosomal homolog 1. (677 aa)
	RBM25	Uncharacterized protein. (821 aa)
	SAP18	Sin3A associated protein 18. (167 aa)
	WTAP	WT1 associated protein. (396 aa)
	KHDRBS2	KH RNA binding domain containing, signal transduction associated 2. (358 aa)
	METTL16	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (559 aa)
	KHDRBS1	KH RNA binding domain containing, signal transduction associated 1. (359 aa)
	CELF2	CUGBP Elav-like family member 2. (567 aa)
	YTHDC1	YTH domain-containing protein. (715 aa)
	MBNL2	Muscleblind like splicing regulator 2. (385 aa)
	PRPF19	Pre-mRNA processing factor 19. (635 aa)
	KHDRBS3	KH RNA binding domain containing, signal transduction associated 3. (420 aa)
	ENSTGUP00000036144	annotation not available (557 aa)
	RBM38	RNA binding motif protein 38. (214 aa)
	FAM172A	Family with sequence similarity 172 member A. (400 aa)
	LOC115491414	Zinc finger CCCH domain-containing protein 10-like. (396 aa)
	RBM7	RRM domain-containing protein. (272 aa)
	CELF5	CUGBP Elav-like family member 5. (514 aa)
	NUP98	Nucleoporin 98. (1795 aa)
	DAZAP1	Uncharacterized protein. (409 aa)
	PTBP3	Polypyrimidine tract binding protein 3. (517 aa)
	SMU1	SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
	THRAP3	Thyroid hormone receptor associated protein 3. (967 aa)
	CELF4-2	CUGBP Elav-like family member 4 isoform X1. (85 aa)
	CELF4	CUGBP Elav-like family member 4. (365 aa)
	RBFOX2	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events. (459 aa)
	FMR1	Fragile X mental retardation 1. (548 aa)
	RBM20	RNA binding motif protein 20. (1238 aa)
	H0YSB3_TAEGU	PWI domain-containing protein. (94 aa)
	ENSTGUP00000032876	annotation not available (680 aa)
	CELF6	RRM domain-containing protein. (480 aa)
	ENSTGUP00000032580	annotation not available (224 aa)
	ENSTGUP00000032540	annotation not available (238 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1QBP	PRPF19	ENSTGUP00000020607	ENSTGUP00000034372	Complement C1q binding protein.	Pre-mRNA processing factor 19.	0.555
CELF1	MBNL1	ENSTGUP00000029097	ENSTGUP00000020207	CUGBP Elav-like family member 1.	Muscleblind like splicing regulator 1.	0.689
CELF1	MBNL2	ENSTGUP00000029097	ENSTGUP00000019433	CUGBP Elav-like family member 1.	Muscleblind like splicing regulator 2.	0.524
CELF1	MBNL3	ENSTGUP00000029097	ENSTGUP00000029005	CUGBP Elav-like family member 1.	Muscleblind like splicing regulator 3.	0.524
CELF2	CELF4	ENSTGUP00000018603	ENSTGUP00000001700	CUGBP Elav-like family member 2.	CUGBP Elav-like family member 4.	0.516
CELF2	MBNL1	ENSTGUP00000018603	ENSTGUP00000020207	CUGBP Elav-like family member 2.	Muscleblind like splicing regulator 1.	0.546
CELF2	MBNL2	ENSTGUP00000018603	ENSTGUP00000019433	CUGBP Elav-like family member 2.	Muscleblind like splicing regulator 2.	0.523
CELF2	MBNL3	ENSTGUP00000018603	ENSTGUP00000029005	CUGBP Elav-like family member 2.	Muscleblind like splicing regulator 3.	0.524
CELF3	CIRBP	ENSTGUP00000022769	ENSTGUP00000019619	Uncharacterized protein.	RRM domain-containing protein.	0.480
CELF3	ENSTGUP00000022741	ENSTGUP00000022769	ENSTGUP00000022741	Uncharacterized protein.	annotation not available	0.923
CELF3	ENSTGUP00000032580	ENSTGUP00000022769	ENSTGUP00000032580	Uncharacterized protein.	annotation not available	0.403
CELF3	RBM24	ENSTGUP00000022769	ENSTGUP00000021313	Uncharacterized protein.	RNA binding motif protein 24.	0.512
CELF3	RBM38	ENSTGUP00000022769	ENSTGUP00000036065	Uncharacterized protein.	RNA binding motif protein 38.	0.509
CELF3	TRA2A	ENSTGUP00000022769	ENSTGUP00000002880	Uncharacterized protein.	Transformer 2 alpha homolog.	0.404
CELF3	TRA2B	ENSTGUP00000022769	ENSTGUP00000025474	Uncharacterized protein.	RRM domain-containing protein.	0.400
CELF4	CELF2	ENSTGUP00000001700	ENSTGUP00000018603	CUGBP Elav-like family member 4.	CUGBP Elav-like family member 2.	0.516
CELF4	ENSTGUP00000022741	ENSTGUP00000001700	ENSTGUP00000022741	CUGBP Elav-like family member 4.	annotation not available	0.542
CELF5	ENSTGUP00000023662	ENSTGUP00000000526	ENSTGUP00000023662	CUGBP Elav-like family member 5.	annotation not available	0.898
CIRBP	CELF3	ENSTGUP00000019619	ENSTGUP00000022769	RRM domain-containing protein.	Uncharacterized protein.	0.480
CIRBP	EIF4A3	ENSTGUP00000019619	ENSTGUP00000002204	RRM domain-containing protein.	Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the [...]	0.453