(35 nodes) Protein K63-linked ubiquitination network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRPF19	Pre-mRNA processing factor 19. (635 aa)
	H1A5S1_TAEGU	RING-type domain-containing protein. (121 aa)
	PELI1	Uncharacterized protein. (460 aa)
	RNF126	Ring finger protein 126. (309 aa)
	H1A520_TAEGU	RING-type domain-containing protein. (168 aa)
	UBE2V1-2	Ubiquitin conjugating enzyme E2 V1. (225 aa)
	RNF115	Ring finger protein 115. (285 aa)
	UBE2N	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	FBXW9	Uncharacterized protein. (526 aa)
	TRAF3	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (544 aa)
	TRAF6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (545 aa)
	ENSTGUP00000023546	annotation not available (228 aa)
	FBXW7	F-box and WD repeat domain containing 7. (745 aa)
	RNF4	Ring finger protein 4. (193 aa)
	ARIH2	RBR-type E3 ubiquitin transferase. (486 aa)
	RNF152	E3 ubiquitin-protein ligase RNF152. (203 aa)
	UBE2T	Ubiquitin conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family. (195 aa)
	TRAF2	TNF receptor-associated factor. (486 aa)
	TRAF5	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (555 aa)
	ITCH	E3 ubiquitin-protein ligase. (874 aa)
	BFAR	Bifunctional apoptosis regulator. (446 aa)
	RNF168	RING-type domain-containing protein. (608 aa)
	TRAF1	TNF receptor-associated factor. (553 aa)
	ZFP91	Uncharacterized protein. (383 aa)
	UBE2O	Ubiquitin conjugating enzyme E2 O. (1294 aa)
	WWP2	E3 ubiquitin-protein ligase. (877 aa)
	UBE2G1	Ubiquitin conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family. (289 aa)
	ENSTGUP00000036423	E3 ubiquitin-protein ligase RNF4-like. (168 aa)
	TRAF3IP2	SEFIR domain-containing protein. (560 aa)
	LOC100228958	WD_REPEATS_REGION domain-containing protein. (783 aa)
	RNF8	FHA domain-containing protein. (502 aa)
	HECTD1	Uncharacterized protein. (2570 aa)
	UBE2V2	UBIQUITIN_CONJUGAT_2 domain-containing protein. (158 aa)
	UBE2V1	Ubiquitin-conjugating enzyme E2 variant 1. (148 aa)
	UBE2S	Ubiquitin conjugating enzyme E2 S. (375 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARIH2	WWP2	ENSTGUP00000019589	ENSTGUP00000008415	RBR-type E3 ubiquitin transferase.	E3 ubiquitin-protein ligase.	0.633
BFAR	RNF8	ENSTGUP00000005110	ENSTGUP00000018292	Bifunctional apoptosis regulator.	FHA domain-containing protein.	0.443
ENSTGUP00000036423	UBE2N	ENSTGUP00000036423	ENSTGUP00000025575	E3 ubiquitin-protein ligase RNF4-like.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.728
ENSTGUP00000036423	UBE2T	ENSTGUP00000036423	ENSTGUP00000001455	E3 ubiquitin-protein ligase RNF4-like.	Ubiquitin conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family.	0.441
ENSTGUP00000036423	UBE2V2	ENSTGUP00000036423	ENSTGUP00000038654	E3 ubiquitin-protein ligase RNF4-like.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.488
H1A520_TAEGU	UBE2N	ENSTGUP00000029839	ENSTGUP00000025575	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.728
H1A520_TAEGU	UBE2T	ENSTGUP00000029839	ENSTGUP00000001455	RING-type domain-containing protein.	Ubiquitin conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family.	0.441
H1A520_TAEGU	UBE2V2	ENSTGUP00000029839	ENSTGUP00000038654	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.488
H1A5S1_TAEGU	UBE2N	ENSTGUP00000034243	ENSTGUP00000025575	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.728
H1A5S1_TAEGU	UBE2T	ENSTGUP00000034243	ENSTGUP00000001455	RING-type domain-containing protein.	Ubiquitin conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family.	0.441
H1A5S1_TAEGU	UBE2V2	ENSTGUP00000034243	ENSTGUP00000038654	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.488
ITCH	TRAF6	ENSTGUP00000003662	ENSTGUP00000024238	E3 ubiquitin-protein ligase.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.968
ITCH	UBE2N	ENSTGUP00000003662	ENSTGUP00000025575	E3 ubiquitin-protein ligase.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.508
ITCH	WWP2	ENSTGUP00000003662	ENSTGUP00000008415	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.658
PELI1	TRAF6	ENSTGUP00000034070	ENSTGUP00000024238	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.871
PELI1	UBE2N	ENSTGUP00000034070	ENSTGUP00000025575	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.735
PELI1	UBE2V1	ENSTGUP00000034070	ENSTGUP00000035344	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2 variant 1.	0.944
PELI1	UBE2V1-2	ENSTGUP00000034070	ENSTGUP00000027557	Uncharacterized protein.	Ubiquitin conjugating enzyme E2 V1.	0.944
PELI1	UBE2V2	ENSTGUP00000034070	ENSTGUP00000038654	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.516
RNF152	UBE2N	ENSTGUP00000018993	ENSTGUP00000025575	E3 ubiquitin-protein ligase RNF152.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.663