(14 nodes) GABA-ergic synapse network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLITRK3	SLIT and NTRK like family member 3. (947 aa)
	SLC6A1	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (598 aa)
	SLITRK2	SLIT and NTRK like family member 2. (856 aa)
	LRRTM1	Leucine rich repeat transmembrane neuronal 1. (485 aa)
	PTPRO	Protein tyrosine phosphatase receptor type O. (233 aa)
	PCDH17	Protocadherin 17. (1205 aa)
	CLSTN3	Calsyntenin 3. (1017 aa)
	LRRTM2	Leucine rich repeat transmembrane neuronal 2. (517 aa)
	SLITRK5	SLIT and NTRK like family member 5. (954 aa)
	NPTN	Neuroplastin. (396 aa)
	CBLN4	Cerebellin 4 precursor. (193 aa)
	LRFN5	Leucine rich repeat and fibronectin type III domain containing 5. (772 aa)
	PCDH19	Protocadherin 19. (1094 aa)
	GABRD	Gamma-aminobutyric acid type A receptor delta subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (452 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLSTN3	LRRTM1	ENSTGUP00000013650	ENSTGUP00000011265	Calsyntenin 3.	Leucine rich repeat transmembrane neuronal 1.	0.675
GABRD	SLC6A1	ENSTGUP00000003066	ENSTGUP00000004339	Gamma-aminobutyric acid type A receptor delta subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.591
LRRTM1	CLSTN3	ENSTGUP00000011265	ENSTGUP00000013650	Leucine rich repeat transmembrane neuronal 1.	Calsyntenin 3.	0.675
PTPRO	SLITRK2	ENSTGUP00000012783	ENSTGUP00000004897	Protein tyrosine phosphatase receptor type O.	SLIT and NTRK like family member 2.	0.492
SLC6A1	GABRD	ENSTGUP00000004339	ENSTGUP00000003066	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	Gamma-aminobutyric acid type A receptor delta subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.591
SLITRK2	PTPRO	ENSTGUP00000004897	ENSTGUP00000012783	SLIT and NTRK like family member 2.	Protein tyrosine phosphatase receptor type O.	0.492