(29 nodes) Laminin-type EGF domain network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H0YTD6_TAEGU	Uncharacterized protein. (1200 aa)
	ATRNL1	Uncharacterized protein. (1399 aa)
	NTNG1	Netrin G1. (560 aa)
	CELSR2	Cadherin EGF LAG seven-pass G-type receptor 2. (2886 aa)
	USH2A	Usherin. (5197 aa)
	NTNG2	Netrin G2. (527 aa)
	MEGF11	Multiple EGF like domains 11. (1074 aa)
	MEGF6	Multiple EGF like domains 6. (1520 aa)
	NTN3	Netrin 3. (587 aa)
	LAMB1	Uncharacterized protein. (1785 aa)
	CRELD2	Uncharacterized protein. (368 aa)
	LAMC2	Uncharacterized protein. (1065 aa)
	LAMC3	Laminin subunit gamma 3. (1659 aa)
	NTN1	Netrin 1. (606 aa)
	SCARF1	Scavenger receptor class F member 1. (833 aa)
	MEGF10	Multiple EGF like domains 10. (1126 aa)
	LAMA5	Uncharacterized protein. (3516 aa)
	LOC105759937	Uncharacterized protein. (638 aa)
	NTN4	Netrin 4. (615 aa)
	CRELD1	EGF_CA domain-containing protein. (425 aa)
	LAMB2	Uncharacterized protein. (1642 aa)
	LAMA3	Uncharacterized protein. (1712 aa)
	H0ZLB6_TAEGU	Uncharacterized protein. (1547 aa)
	LAMA4	Laminin subunit alpha 4. (1783 aa)
	ATRN	Attractin. (1413 aa)
	LAMA2	Uncharacterized protein. (3342 aa)
	SCARF2	Scavenger receptor class F member 2. (956 aa)
	CELSR1	Cadherin EGF LAG seven-pass G-type receptor 1; Belongs to the G-protein coupled receptor 2 family. (2912 aa)
	STAB2	Uncharacterized protein. (2413 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H0YTD6_TAEGU	LAMA2	ENSTGUP00000026106	ENSTGUP00000019486	Uncharacterized protein.	Uncharacterized protein.	0.594
H0YTD6_TAEGU	LAMA3	ENSTGUP00000026106	ENSTGUP00000010839	Uncharacterized protein.	Uncharacterized protein.	0.631
H0YTD6_TAEGU	LAMA4	ENSTGUP00000026106	ENSTGUP00000012350	Uncharacterized protein.	Laminin subunit alpha 4.	0.744
H0YTD6_TAEGU	LAMA5	ENSTGUP00000026106	ENSTGUP00000008041	Uncharacterized protein.	Uncharacterized protein.	0.631
H0YTD6_TAEGU	LAMC2	ENSTGUP00000026106	ENSTGUP00000004091	Uncharacterized protein.	Uncharacterized protein.	0.832
H0YTD6_TAEGU	LAMC3	ENSTGUP00000026106	ENSTGUP00000004936	Uncharacterized protein.	Laminin subunit gamma 3.	0.600
H0YTD6_TAEGU	USH2A	ENSTGUP00000026106	ENSTGUP00000034258	Uncharacterized protein.	Usherin.	0.524
LAMA2	H0YTD6_TAEGU	ENSTGUP00000019486	ENSTGUP00000026106	Uncharacterized protein.	Uncharacterized protein.	0.594
LAMA2	LAMB1	ENSTGUP00000019486	ENSTGUP00000003428	Uncharacterized protein.	Uncharacterized protein.	0.883
LAMA2	LAMB2	ENSTGUP00000019486	ENSTGUP00000009090	Uncharacterized protein.	Uncharacterized protein.	0.825
LAMA2	LAMC2	ENSTGUP00000019486	ENSTGUP00000004091	Uncharacterized protein.	Uncharacterized protein.	0.809
LAMA2	LAMC3	ENSTGUP00000019486	ENSTGUP00000004936	Uncharacterized protein.	Laminin subunit gamma 3.	0.794
LAMA2	MEGF10	ENSTGUP00000019486	ENSTGUP00000006709	Uncharacterized protein.	Multiple EGF like domains 10.	0.611
LAMA2	MEGF11	ENSTGUP00000019486	ENSTGUP00000037602	Uncharacterized protein.	Multiple EGF like domains 11.	0.637
LAMA3	H0YTD6_TAEGU	ENSTGUP00000010839	ENSTGUP00000026106	Uncharacterized protein.	Uncharacterized protein.	0.631
LAMA3	LAMB1	ENSTGUP00000010839	ENSTGUP00000003428	Uncharacterized protein.	Uncharacterized protein.	0.784
LAMA3	LAMB2	ENSTGUP00000010839	ENSTGUP00000009090	Uncharacterized protein.	Uncharacterized protein.	0.728
LAMA3	LAMC2	ENSTGUP00000010839	ENSTGUP00000004091	Uncharacterized protein.	Uncharacterized protein.	0.763
LAMA3	LAMC3	ENSTGUP00000010839	ENSTGUP00000004936	Uncharacterized protein.	Laminin subunit gamma 3.	0.664
LAMA3	LOC105759937	ENSTGUP00000010839	ENSTGUP00000008516	Uncharacterized protein.	Uncharacterized protein.	0.415