STRINGSTRING
TRNAU1AP TRNAU1AP CELF5 CELF5 LOC100229022 LOC100229022 H0YQF3_TAEGU H0YQF3_TAEGU CPEB4 CPEB4 PPARGC1B PPARGC1B RBM7 RBM7 RBM27 RBM27 ESRP2 ESRP2 RRP7A RRP7A REXO5 REXO5 ENOX2 ENOX2 RBM20 RBM20 BOLL BOLL MTHFSD MTHFSD RBFOX2 RBFOX2 HNRNPA2B1 HNRNPA2B1 MARF1 MARF1 RBMS1 RBMS1 RBMS3 RBMS3 PPARGC1A PPARGC1A DND1 DND1 RBPMS2 RBPMS2 TMEM63A TMEM63A ELAVL2 ELAVL2 RBM12B RBM12B CELF6 CELF6 RBPMS RBPMS CPSF6 CPSF6 LARP4B LARP4B MATR3 MATR3 RBM39 RBM39 CPEB3 CPEB3 SRSF6 SRSF6 LOC100218449 LOC100218449 RBM46 RBM46 NONO NONO CELF1 CELF1 HNRNPH1 HNRNPH1 EWSR1 EWSR1 HNRNPDL HNRNPDL SRSF1 SRSF1 CPEB1 CPEB1 CSTF2 CSTF2 PTBP2 PTBP2 RBM12 RBM12 SCAF8 SCAF8 EIF4B EIF4B U2SURP U2SURP GRSF1 GRSF1 TNRC6B TNRC6B UHMK1 UHMK1 ALKBH8 ALKBH8 HNRNPA3 HNRNPA3 SRSF7 SRSF7 U2AF1 U2AF1 ELAVL4 ELAVL4 DNAJC17 DNAJC17 RNPS1 RNPS1 PABPC1 PABPC1 NUP35 NUP35 LOC100220017 LOC100220017 IGF2BP2 IGF2BP2 ELAVL1 ELAVL1 LOC100229913 LOC100229913 PTBP1 PTBP1 MSI1 MSI1 TNRC6A TNRC6A LOC100190722 LOC100190722 RBFOX1 RBFOX1 HTATSF1 HTATSF1 RBM24 RBM24 SREK1 SREK1 HNRNPH3 HNRNPH3 RBM47 RBM47 LARP7 LARP7 SYNJ1 SYNJ1 SSB SSB CELF2 CELF2 TIA1 TIA1 LOC100225495 LOC100225495 SCAF4 SCAF4 ENPP5 ENPP5 SF3B6 SF3B6 RBM26 RBM26 ENOX1 ENOX1 SLIRP SLIRP RBM43 RBM43 ESRP1 ESRP1 RALYL RALYL SRSF5 SRSF5 PSPC1 PSPC1 RBM25 RBM25 TIAL1 TIAL1 SYNJ2 SYNJ2 PPIL4 PPIL4 SRSF11-2 SRSF11-2 RBM34 RBM34 RAVER2-2 RAVER2-2 PPRC1 PPRC1 CPEB2 CPEB2 NCL NCL POLDIP3 POLDIP3 R3HCC1L R3HCC1L CNOT4 CNOT4 RBM45 RBM45 RBM19 RBM19 NCBP2 NCBP2 MSI2 MSI2 EIF3B EIF3B TNRC6C TNRC6C MYEF2 MYEF2 SART3 SART3 LEMD3 LEMD3 BRAP BRAP CPSF7 CPSF7 RBM41 RBM41 RBM5 RBM5 SETD1B SETD1B SLTM SLTM NCOA5 NCOA5 ZCRB1 ZCRB1 NCBP3 NCBP3 SNRNP35 SNRNP35 RBMX2 RBMX2 PABPC1L PABPC1L A1CF A1CF PARN PARN RBM15B RBM15B RNPC3 RNPC3 TAF15 TAF15 RBM8A RBM8A NIFK NIFK LOC105759399 LOC105759399 DTX3L DTX3L RALY RALY ALYREF ALYREF TARDBP TARDBP DAZL DAZL HNRNPD HNRNPD TRA2A TRA2A IGF2BP3 IGF2BP3 RBMX RBMX RBM17 RBM17 SFPQ SFPQ CELF4 CELF4 G3BP2 G3BP2 PPIE PPIE PABPC4 PABPC4 PTBP3 PTBP3 RCAN3 RCAN3 HNRNPM HNRNPM HNRNPR HNRNPR DAZAP1 DAZAP1 RBM22 RBM22 SRSF4 SRSF4 G3BP1 G3BP1 RBM33 RBM33
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TRNAU1APtRNA selenocysteine 1 associated protein 1. (287 aa)
CELF5CUGBP Elav-like family member 5. (514 aa)
LOC100229022Uncharacterized protein. (998 aa)
H0YQF3_TAEGUUncharacterized protein. (891 aa)
CPEB4Cytoplasmic polyadenylation element binding protein 4. (711 aa)
PPARGC1BPPARG coactivator 1 beta. (988 aa)
RBM7RRM domain-containing protein. (272 aa)
RBM27Uncharacterized protein. (1103 aa)
ESRP2Epithelial splicing regulatory protein 2. (727 aa)
RRP7ARibosomal RNA processing 7 homolog A. (275 aa)
REXO5RNA exonuclease 5. (713 aa)
ENOX2Ecto-NOX disulfide-thiol exchanger 2. (784 aa)
RBM20RNA binding motif protein 20. (1238 aa)
BOLLBoule homolog, RNA binding protein. (302 aa)
MTHFSDMethenyltetrahydrofolate synthetase domain containing. (390 aa)
RBFOX2RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events. (459 aa)
HNRNPA2B1Heterogeneous nuclear ribonucleoprotein A2/B1. (349 aa)
MARF1Meiosis regulator and mRNA stability factor 1. (1744 aa)
RBMS1RNA binding motif single stranded interacting protein 1. (403 aa)
RBMS3RNA binding motif single stranded interacting protein 3. (519 aa)
PPARGC1APPARG coactivator 1 alpha. (807 aa)
DND1RRM domain-containing protein. (334 aa)
RBPMS2RNA binding protein, mRNA processing factor 2. (238 aa)
TMEM63ATransmembrane protein 63A. (752 aa)
ELAVL2ELAV-like protein; Belongs to the RRM elav family. (381 aa)
RBM12BRNA binding motif protein 12B. (699 aa)
CELF6RRM domain-containing protein. (480 aa)
RBPMSRNA binding protein, mRNA processing factor. (314 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (697 aa)
LARP4BHTH La-type RNA-binding domain-containing protein. (1793 aa)
MATR3Uncharacterized protein. (987 aa)
RBM39RNA binding motif protein 39. (518 aa)
CPEB3Cytoplasmic polyadenylation element binding protein 3. (816 aa)
SRSF6Serine and arginine rich splicing factor 6. (348 aa)
LOC100218449Poly(U) binding splicing factor 60. (529 aa)
RBM46RNA binding motif protein 46. (462 aa)
NONONon-POU domain containing octamer binding. (475 aa)
CELF1CUGBP Elav-like family member 1. (532 aa)
HNRNPH1Uncharacterized protein. (568 aa)
EWSR1EWS RNA binding protein 1. (738 aa)
HNRNPDLHeterogeneous nuclear ribonucleoprotein D like. (323 aa)
SRSF1RRM domain-containing protein. (256 aa)
CPEB1Uncharacterized protein. (590 aa)
CSTF2Cleavage stimulation factor subunit 2. (595 aa)
PTBP2Polypyrimidine tract binding protein 2. (564 aa)
RBM12RNA binding motif protein 12. (879 aa)
SCAF8SR-related CTD associated factor 8. (1395 aa)
EIF4BEukaryotic translation initiation factor 4B. (633 aa)
U2SURPU2 snRNP associated SURP domain containing. (989 aa)
GRSF1G-rich RNA sequence binding factor 1. (433 aa)
TNRC6BUncharacterized protein. (1854 aa)
UHMK1U2AF homology motif kinase 1. (537 aa)
ALKBH8Uncharacterized protein. (773 aa)
HNRNPA3Heterogeneous nuclear ribonucleoprotein A3. (387 aa)
SRSF7Uncharacterized protein. (421 aa)
U2AF1Putative U2 snRNP auxiliary factor small subunit variant 1. (270 aa)
ELAVL4ELAV-like protein; Belongs to the RRM elav family. (395 aa)
DNAJC17Uncharacterized protein. (369 aa)
RNPS1RNA binding protein with serine rich domain 1. (361 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (681 aa)
NUP35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (486 aa)
LOC100220017Uncharacterized protein. (478 aa)
IGF2BP2RRM domain-containing protein. (612 aa)
ELAVL1ELAV-like protein; Belongs to the RRM elav family. (464 aa)
LOC100229913RRM domain-containing protein. (264 aa)
PTBP1Polypyrimidine tract binding protein 1. (566 aa)
MSI1Musashi RNA binding protein 1. (456 aa)
TNRC6ATrinucleotide repeat containing adaptor 6A. (1946 aa)
LOC100190722Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (326 aa)
RBFOX1RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events. (413 aa)
HTATSF1HIV-1 Tat specific factor 1. (451 aa)
RBM24RNA binding motif protein 24. (280 aa)
SREK1Splicing regulatory glutamic acid and lysine rich protein 1. (465 aa)
HNRNPH3Heterogeneous nuclear ribonucleoprotein H3. (419 aa)
RBM47RNA binding motif protein 47. (648 aa)
LARP7La ribonucleoprotein domain family member 7. (590 aa)
SYNJ1Synaptojanin 1. (1557 aa)
SSBPutative Sjogren syndrome antigen B variant 2. (407 aa)
CELF2CUGBP Elav-like family member 2. (567 aa)
TIA1TIA1 cytotoxic granule associated RNA binding protein. (364 aa)
LOC100225495RNA binding motif protein 4. (368 aa)
SCAF4SR-related CTD associated factor 4. (1072 aa)
ENPP5Ectonucleotide pyrophosphatase/phosphodiesterase family member 5. (665 aa)
SF3B6Splicing factor 3b subunit 6. (161 aa)
RBM26RNA binding motif protein 26. (1010 aa)
ENOX1Ecto-NOX disulfide-thiol exchanger 1. (623 aa)
SLIRPSRA stem-loop interacting RNA binding protein. (106 aa)
RBM43Uncharacterized protein. (357 aa)
ESRP1Epithelial splicing regulatory protein 1. (607 aa)
RALYLRALY RNA binding protein like. (320 aa)
SRSF5Serine and arginine rich splicing factor 5. (265 aa)
PSPC1Paraspeckle component 1. (525 aa)
RBM25Uncharacterized protein. (821 aa)
TIAL1TIA1 cytotoxic granule associated RNA binding protein like 1. (395 aa)
SYNJ2Synaptojanin 2. (1506 aa)
PPIL4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (479 aa)
SRSF11-2Serine and arginine rich splicing factor 11. (533 aa)
RBM34RNA binding motif protein 34. (232 aa)
RAVER2-2Ribonucleoprotein, PTB binding 2. (699 aa)
PPRC1RRM domain-containing protein. (1336 aa)
CPEB2Cytoplasmic polyadenylation element binding protein 2. (833 aa)
NCLUncharacterized protein. (690 aa)
POLDIP3RRM domain-containing protein. (416 aa)
R3HCC1LUncharacterized protein. (662 aa)
CNOT4CCR4-NOT transcription complex subunit 4. (762 aa)
RBM45Uncharacterized protein. (468 aa)
RBM19RNA binding motif protein 19. (943 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
MSI2Musashi RNA binding protein 2. (324 aa)
EIF3BEukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (784 aa)
TNRC6CTrinucleotide repeat containing adaptor 6C. (1837 aa)
MYEF2Myelin expression factor 2. (540 aa)
SART3Spliceosome associated factor 3, U4/U6 recycling protein. (1011 aa)
LEMD3LEM domain containing 3. (913 aa)
BRAPUncharacterized protein. (591 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (685 aa)
RBM41RRM domain-containing protein. (419 aa)
RBM5RNA binding motif protein 5. (593 aa)
SETD1BUncharacterized protein. (2004 aa)
SLTMSAFB like transcription modulator. (1027 aa)
NCOA5Nuclear receptor coactivator 5. (697 aa)
ZCRB1Zinc finger CCHC-type and RNA binding motif containing 1. (216 aa)
NCBP3Nuclear cap binding subunit 3. (595 aa)
SNRNP35RRM domain-containing protein. (263 aa)
RBMX2RNA binding motif protein X-linked 2. (315 aa)
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
A1CFAPOBEC1 complementation factor. (581 aa)
PARNPoly(A)-specific ribonuclease. (638 aa)
RBM15BRNA binding motif protein 15B. (916 aa)
RNPC3RRM domain-containing protein. (534 aa)
TAF15TATA-box binding protein associated factor 15. (471 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (199 aa)
NIFKNucleolar protein interacting with the FHA domain of MKI67. (257 aa)
LOC105759399Poly [ADP-ribose] polymerase. (1883 aa)
DTX3LDeltex E3 ubiquitin ligase 3L. (738 aa)
RALYRALY heterogeneous nuclear ribonucleoprotein. (432 aa)
ALYREFTHO complex subunit 4; Export adapter involved in nuclear export of spliced and unspliced mRNA. Binds mRNA which is thought to be transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway). Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap- dependent manner to a regio [...] (254 aa)
TARDBPTAR DNA binding protein. (414 aa)
DAZLRRM domain-containing protein. (292 aa)
HNRNPDHeterogeneous nuclear ribonucleoprotein D. (511 aa)
TRA2ATransformer 2 alpha homolog. (276 aa)
IGF2BP3Uncharacterized protein. (584 aa)
RBMXRRM domain-containing protein. (385 aa)
RBM17RNA binding motif protein 17. (399 aa)
SFPQSplicing factor proline and glutamine rich. (639 aa)
CELF4CUGBP Elav-like family member 4. (365 aa)
G3BP2G3BP stress granule assembly factor 2. (482 aa)
PPIEPeptidylprolyl isomerase E. (301 aa)
PABPC4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (631 aa)
PTBP3Polypyrimidine tract binding protein 3. (517 aa)
RCAN3RCAN family member 3. (254 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (867 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (693 aa)
DAZAP1Uncharacterized protein. (409 aa)
RBM22RNA binding motif protein 22. (420 aa)
SRSF4Serine and arginine rich splicing factor 4. (461 aa)
G3BP1G3BP stress granule assembly factor 1. (483 aa)
RBM33RNA binding motif protein 33. (1191 aa)
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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