11 items (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GGH	Folate gamma-glutamyl hydrolase. (325 aa)
	GATD1	Glutamine amidotransferase like class 1 domain containing 1. (218 aa)
	LOC100230348	Uncharacterized protein. (224 aa)
	PARK7	Putative Parkinson disease autosomal recessive early onset 7 variant 1. (233 aa)
	CTPS1	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (627 aa)
	CTPS2	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (609 aa)
	TCAF2	Peptidase M60 domain-containing protein. (906 aa)
	LOC100222462	Uncharacterized protein. (225 aa)
	GATD3A	Uncharacterized protein. (259 aa)
	CPS1	Carbamoyl-phosphate synthase 1. (1579 aa)
	GMPS	Guanine monophosphate synthase. (693 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPS1	CTPS1	ENSTGUP00000031649	ENSTGUP00000000859	Carbamoyl-phosphate synthase 1.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.537
CPS1	CTPS2	ENSTGUP00000031649	ENSTGUP00000026289	Carbamoyl-phosphate synthase 1.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.537
CPS1	GMPS	ENSTGUP00000031649	ENSTGUP00000011614	Carbamoyl-phosphate synthase 1.	Guanine monophosphate synthase.	0.671
CTPS1	CPS1	ENSTGUP00000000859	ENSTGUP00000031649	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Carbamoyl-phosphate synthase 1.	0.537
CTPS1	CTPS2	ENSTGUP00000000859	ENSTGUP00000026289	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.901
CTPS1	GMPS	ENSTGUP00000000859	ENSTGUP00000011614	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Guanine monophosphate synthase.	0.810
CTPS2	CPS1	ENSTGUP00000026289	ENSTGUP00000031649	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Carbamoyl-phosphate synthase 1.	0.537
CTPS2	CTPS1	ENSTGUP00000026289	ENSTGUP00000000859	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.901
CTPS2	GMPS	ENSTGUP00000026289	ENSTGUP00000011614	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Guanine monophosphate synthase.	0.810
GMPS	CPS1	ENSTGUP00000011614	ENSTGUP00000031649	Guanine monophosphate synthase.	Carbamoyl-phosphate synthase 1.	0.671
GMPS	CTPS1	ENSTGUP00000011614	ENSTGUP00000000859	Guanine monophosphate synthase.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.810
GMPS	CTPS2	ENSTGUP00000011614	ENSTGUP00000026289	Guanine monophosphate synthase.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.810
GMPS	PARK7	ENSTGUP00000011614	ENSTGUP00000002606	Guanine monophosphate synthase.	Putative Parkinson disease autosomal recessive early onset 7 variant 1.	0.564
PARK7	GMPS	ENSTGUP00000002606	ENSTGUP00000011614	Putative Parkinson disease autosomal recessive early onset 7 variant 1.	Guanine monophosphate synthase.	0.564