54 items (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSTGUP00000020504	annotation not available (663 aa)
	ITSN1-2	Intersectin 1. (1725 aa)
	NET1	Neuroepithelial cell transforming 1. (594 aa)
	SOS1	SOS Ras/Rac guanine nucleotide exchange factor 1. (1322 aa)
	ARHGEF33	DH domain-containing protein. (796 aa)
	ARHGEF6	Rac/Cdc42 guanine nucleotide exchange factor 6. (738 aa)
	MCF2	MCF.2 cell line derived transforming sequence. (1145 aa)
	PLEKHG5	Pleckstrin homology and RhoGEF domain containing G5. (1107 aa)
	ARHGEF16	Rho guanine nucleotide exchange factor 16. (695 aa)
	VAV3	Vav guanine nucleotide exchange factor 3. (846 aa)
	LOC100224907	TGc domain-containing protein. (689 aa)
	TGM6	TGc domain-containing protein. (704 aa)
	OBSL1	Obscurin-like protein 1. (2263 aa)
	NGEF	Neuronal guanine nucleotide exchange factor. (663 aa)
	TRIO	Trio Rho guanine nucleotide exchange factor. (2890 aa)
	AATF	Uncharacterized protein. (557 aa)
	ARHGEF39	Rho guanine nucleotide exchange factor 39. (441 aa)
	ITSN1	Intersectin 1. (1710 aa)
	ARHGEF18	Uncharacterized protein. (1515 aa)
	ECT2	Uncharacterized protein. (985 aa)
	ARHGEF26	Uncharacterized protein. (875 aa)
	ARHGEF5	Uncharacterized protein. (1775 aa)
	SOS2	SOS Ras/Rho guanine nucleotide exchange factor 2. (1331 aa)
	ARHGEF38	Uncharacterized protein. (782 aa)
	TIAM1	T cell lymphoma invasion and metastasis 1. (1604 aa)
	ARHGEF17	Rho guanine nucleotide exchange factor 17. (958 aa)
	FGD3	FYVE, RhoGEF and PH domain containing 3. (917 aa)
	ENSTGUP00000038129	annotation not available (216 aa)
	ENSTGUP00000037438	annotation not available (333 aa)
	TIAM2	DH domain-containing protein. (1725 aa)
	ENSTGUP00000034337	annotation not available (812 aa)
	SESTD1	SEC14 and spectrin domain containing 1. (697 aa)
	FGD4	Uncharacterized protein. (1050 aa)
	ARHGEF37	DH domain-containing protein. (729 aa)
	ARHGEF7	Rho guanine nucleotide exchange factor 7. (803 aa)
	AKAP13	Uncharacterized protein. (2692 aa)
	KALRN	Uncharacterized protein. (2983 aa)
	ABR	ABR activator of RhoGEF and GTPase. (861 aa)
	ARHGEF10	Rho guanine nucleotide exchange factor 10. (1353 aa)
	H0ZTY7_TAEGU	TGc domain-containing protein. (695 aa)
	ARHGEF11	DH domain-containing protein. (1206 aa)
	MCF2L	Uncharacterized protein. (1164 aa)
	ARHGEF3	Rho guanine nucleotide exchange factor 3. (573 aa)
	ARHGEF4	Uncharacterized protein. (2247 aa)
	ENSTGUP00000020764	annotation not available (782 aa)
	ARHGEF12	Rho guanine nucleotide exchange factor 12. (1539 aa)
	MCF2L2	MCF.2 cell line derived transforming sequence-like 2. (1283 aa)
	ENSTGUP00000024522	annotation not available (197 aa)
	RASGRF2	Uncharacterized protein. (1247 aa)
	ARHGEF9	Cdc42 guanine nucleotide exchange factor 9. (1537 aa)
	FGD2	Uncharacterized protein. (818 aa)
	ARHGEF10L	Uncharacterized protein. (1357 aa)
	ARHGEF2	Rho guanine nucleotide exchange factor 2 isoform X3. (1180 aa)
	VAV2	Vav guanine nucleotide exchange factor 2. (878 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKAP13	ARHGEF16	ENSTGUP00000031172	ENSTGUP00000002885	Uncharacterized protein.	Rho guanine nucleotide exchange factor 16.	0.531
AKAP13	ECT2	ENSTGUP00000031172	ENSTGUP00000011143	Uncharacterized protein.	Uncharacterized protein.	0.474
AKAP13	ITSN1	ENSTGUP00000031172	ENSTGUP00000000534	Uncharacterized protein.	Intersectin 1.	0.472
AKAP13	ITSN1-2	ENSTGUP00000031172	ENSTGUP00000029170	Uncharacterized protein.	Intersectin 1.	0.472
AKAP13	KALRN	ENSTGUP00000031172	ENSTGUP00000030778	Uncharacterized protein.	Uncharacterized protein.	0.416
AKAP13	MCF2	ENSTGUP00000031172	ENSTGUP00000002272	Uncharacterized protein.	MCF.2 cell line derived transforming sequence.	0.443
AKAP13	TRIO	ENSTGUP00000031172	ENSTGUP00000007697	Uncharacterized protein.	Trio Rho guanine nucleotide exchange factor.	0.416
ARHGEF10	ARHGEF2	ENSTGUP00000030395	ENSTGUP00000027759	Rho guanine nucleotide exchange factor 10.	Rho guanine nucleotide exchange factor 2 isoform X3.	0.504
ARHGEF10	ARHGEF33	ENSTGUP00000030395	ENSTGUP00000002138	Rho guanine nucleotide exchange factor 10.	DH domain-containing protein.	0.547
ARHGEF10	ARHGEF7	ENSTGUP00000030395	ENSTGUP00000032211	Rho guanine nucleotide exchange factor 10.	Rho guanine nucleotide exchange factor 7.	0.459
ARHGEF11	ECT2	ENSTGUP00000017646	ENSTGUP00000011143	DH domain-containing protein.	Uncharacterized protein.	0.498
ARHGEF11	ITSN1	ENSTGUP00000017646	ENSTGUP00000000534	DH domain-containing protein.	Intersectin 1.	0.474
ARHGEF11	ITSN1-2	ENSTGUP00000017646	ENSTGUP00000029170	DH domain-containing protein.	Intersectin 1.	0.474
ARHGEF12	ARHGEF6	ENSTGUP00000022757	ENSTGUP00000002199	Rho guanine nucleotide exchange factor 12.	Rac/Cdc42 guanine nucleotide exchange factor 6.	0.933
ARHGEF12	ECT2	ENSTGUP00000022757	ENSTGUP00000011143	Rho guanine nucleotide exchange factor 12.	Uncharacterized protein.	0.498
ARHGEF12	ITSN1	ENSTGUP00000022757	ENSTGUP00000000534	Rho guanine nucleotide exchange factor 12.	Intersectin 1.	0.474
ARHGEF12	ITSN1-2	ENSTGUP00000022757	ENSTGUP00000029170	Rho guanine nucleotide exchange factor 12.	Intersectin 1.	0.474
ARHGEF16	AKAP13	ENSTGUP00000002885	ENSTGUP00000031172	Rho guanine nucleotide exchange factor 16.	Uncharacterized protein.	0.531
ARHGEF16	ARHGEF18	ENSTGUP00000002885	ENSTGUP00000000432	Rho guanine nucleotide exchange factor 16.	Uncharacterized protein.	0.404
ARHGEF16	ARHGEF38	ENSTGUP00000002885	ENSTGUP00000013722	Rho guanine nucleotide exchange factor 16.	Uncharacterized protein.	0.603