(24 nodes) Amino acid permease network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100220197	Uncharacterized protein. (517 aa)
	SLC12A5	Solute carrier family 12 member 5. (1105 aa)
	SLC12A9	AA_permease domain-containing protein. (989 aa)
	SLC7A2	Solute carrier family 7 member 2. (651 aa)
	LOC100225592	Uncharacterized protein. (484 aa)
	SLC7A1	AA_permease_C domain-containing protein. (624 aa)
	H0ZQ02_TAEGU	Uncharacterized protein. (480 aa)
	SLC7A5	Solute carrier family 7 member 5. (522 aa)
	SLC7A10	Uncharacterized protein. (502 aa)
	SLC7A4	Solute carrier family 7 member 4. (631 aa)
	SLC7A14	Solute carrier family 7 member 14. (771 aa)
	LOC115493048	Large neutral amino acids transporter small subunit 2-like. (509 aa)
	SLC12A4	Solute carrier family 12 member 4. (1143 aa)
	SLC7A3	Solute carrier family 7 member 3. (712 aa)
	LOC115493059	Large neutral amino acids transporter small subunit 2-like. (513 aa)
	SLC7A13	Uncharacterized protein. (488 aa)
	SLC12A7	Uncharacterized protein. (1085 aa)
	SLC7A9	Solute carrier family 7 member 9. (500 aa)
	SLC7A6	Solute carrier family 7 member 6. (515 aa)
	SLC12A2	Solute carrier family 12 member 2. (1134 aa)
	SLC12A3	Solute carrier family 12 member 3. (1031 aa)
	SLC12A8	Solute carrier family 12 member 8. (730 aa)
	H0YRA5_TAEGU	AA_permease_C domain-containing protein. (384 aa)
	SLC7A11	Solute carrier family 7 member 11. (503 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H0YRA5_TAEGU	LOC100225592	ENSTGUP00000000814	ENSTGUP00000013553	AA_permease_C domain-containing protein.	Uncharacterized protein.	0.427
H0ZQ02_TAEGU	SLC7A11	ENSTGUP00000012685	ENSTGUP00000001556	Uncharacterized protein.	Solute carrier family 7 member 11.	0.902
LOC100225592	H0YRA5_TAEGU	ENSTGUP00000013553	ENSTGUP00000000814	Uncharacterized protein.	AA_permease_C domain-containing protein.	0.427
LOC115493059	SLC7A14	ENSTGUP00000030326	ENSTGUP00000011282	Large neutral amino acids transporter small subunit 2-like.	Solute carrier family 7 member 14.	0.457
SLC12A5	SLC7A4	ENSTGUP00000006128	ENSTGUP00000010934	Solute carrier family 12 member 5.	Solute carrier family 7 member 4.	0.579
SLC7A1	SLC7A5	ENSTGUP00000012042	ENSTGUP00000007896	AA_permease_C domain-containing protein.	Solute carrier family 7 member 5.	0.543
SLC7A11	H0ZQ02_TAEGU	ENSTGUP00000001556	ENSTGUP00000012685	Solute carrier family 7 member 11.	Uncharacterized protein.	0.902
SLC7A13	SLC7A3	ENSTGUP00000029968	ENSTGUP00000030786	Uncharacterized protein.	Solute carrier family 7 member 3.	0.513
SLC7A14	LOC115493059	ENSTGUP00000011282	ENSTGUP00000030326	Solute carrier family 7 member 14.	Large neutral amino acids transporter small subunit 2-like.	0.457
SLC7A3	SLC7A13	ENSTGUP00000030786	ENSTGUP00000029968	Solute carrier family 7 member 3.	Uncharacterized protein.	0.513
SLC7A4	SLC12A5	ENSTGUP00000010934	ENSTGUP00000006128	Solute carrier family 7 member 4.	Solute carrier family 12 member 5.	0.579
SLC7A5	SLC7A1	ENSTGUP00000007896	ENSTGUP00000012042	Solute carrier family 7 member 5.	AA_permease_C domain-containing protein.	0.543