(6 nodes) RIH domain network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ITPR1	Uncharacterized protein. (2748 aa)
	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3. (2663 aa)
	RYR2	Ryanodine receptor 2. (4939 aa)
	ENSTGUP00000026052	Ryanodine receptor 1-like. (3693 aa)
	RYR3	Uncharacterized protein. (3017 aa)
	ITPR2	Uncharacterized protein. (2700 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ITPR1	ITPR2	ENSTGUP00000010616	ENSTGUP00000028641	Uncharacterized protein.	Uncharacterized protein.	0.941
ITPR1	ITPR3	ENSTGUP00000010616	ENSTGUP00000001876	Uncharacterized protein.	Inositol 1,4,5-trisphosphate receptor type 3.	0.901
ITPR2	ITPR1	ENSTGUP00000028641	ENSTGUP00000010616	Uncharacterized protein.	Uncharacterized protein.	0.941
ITPR2	ITPR3	ENSTGUP00000028641	ENSTGUP00000001876	Uncharacterized protein.	Inositol 1,4,5-trisphosphate receptor type 3.	0.902
ITPR3	ITPR1	ENSTGUP00000001876	ENSTGUP00000010616	Inositol 1,4,5-trisphosphate receptor type 3.	Uncharacterized protein.	0.901
ITPR3	ITPR2	ENSTGUP00000001876	ENSTGUP00000028641	Inositol 1,4,5-trisphosphate receptor type 3.	Uncharacterized protein.	0.902
RYR2	RYR3	ENSTGUP00000027893	ENSTGUP00000012081	Ryanodine receptor 2.	Uncharacterized protein.	0.902
RYR3	RYR2	ENSTGUP00000012081	ENSTGUP00000027893	Uncharacterized protein.	Ryanodine receptor 2.	0.902