(9 nodes) Vps4 C terminal oligomerisation domain network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VCP	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	VPS4B	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (441 aa)
	FIGNL1	Fidgetin like 1; Belongs to the AAA ATPase family. (689 aa)
	SPAST	Spastin; Belongs to the AAA ATPase family. (611 aa)
	KATNA1	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. (495 aa)
	VPS4A	AAA domain-containing protein. (446 aa)
	H1A4C3_TAEGU	Uncharacterized protein. (740 aa)
	FIGN	Fidgetin, microtubule severing factor; Belongs to the AAA ATPase family. (756 aa)
	FIGNL2	Putative fidgetin-like protein 2. (740 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIGN	VPS4A	ENSTGUP00000024618	ENSTGUP00000014855	Fidgetin, microtubule severing factor; Belongs to the AAA ATPase family.	AAA domain-containing protein.	0.452
FIGN	VPS4B	ENSTGUP00000024618	ENSTGUP00000002118	Fidgetin, microtubule severing factor; Belongs to the AAA ATPase family.	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	0.450
FIGNL1	VPS4A	ENSTGUP00000008161	ENSTGUP00000014855	Fidgetin like 1; Belongs to the AAA ATPase family.	AAA domain-containing protein.	0.462
FIGNL1	VPS4B	ENSTGUP00000008161	ENSTGUP00000002118	Fidgetin like 1; Belongs to the AAA ATPase family.	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	0.460
FIGNL2	VPS4A	ENSTGUP00000033661	ENSTGUP00000014855	Putative fidgetin-like protein 2.	AAA domain-containing protein.	0.487
FIGNL2	VPS4B	ENSTGUP00000033661	ENSTGUP00000002118	Putative fidgetin-like protein 2.	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	0.479
H1A4C3_TAEGU	VPS4A	ENSTGUP00000021014	ENSTGUP00000014855	Uncharacterized protein.	AAA domain-containing protein.	0.487
H1A4C3_TAEGU	VPS4B	ENSTGUP00000021014	ENSTGUP00000002118	Uncharacterized protein.	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	0.479
SPAST	VPS4A	ENSTGUP00000008762	ENSTGUP00000014855	Spastin; Belongs to the AAA ATPase family.	AAA domain-containing protein.	0.461
SPAST	VPS4B	ENSTGUP00000008762	ENSTGUP00000002118	Spastin; Belongs to the AAA ATPase family.	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	0.460
VPS4A	FIGN	ENSTGUP00000014855	ENSTGUP00000024618	AAA domain-containing protein.	Fidgetin, microtubule severing factor; Belongs to the AAA ATPase family.	0.452
VPS4A	FIGNL1	ENSTGUP00000014855	ENSTGUP00000008161	AAA domain-containing protein.	Fidgetin like 1; Belongs to the AAA ATPase family.	0.462
VPS4A	FIGNL2	ENSTGUP00000014855	ENSTGUP00000033661	AAA domain-containing protein.	Putative fidgetin-like protein 2.	0.487
VPS4A	H1A4C3_TAEGU	ENSTGUP00000014855	ENSTGUP00000021014	AAA domain-containing protein.	Uncharacterized protein.	0.487
VPS4A	SPAST	ENSTGUP00000014855	ENSTGUP00000008762	AAA domain-containing protein.	Spastin; Belongs to the AAA ATPase family.	0.461
VPS4A	VPS4B	ENSTGUP00000014855	ENSTGUP00000002118	AAA domain-containing protein.	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	0.902
VPS4B	FIGN	ENSTGUP00000002118	ENSTGUP00000024618	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	Fidgetin, microtubule severing factor; Belongs to the AAA ATPase family.	0.450
VPS4B	FIGNL1	ENSTGUP00000002118	ENSTGUP00000008161	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	Fidgetin like 1; Belongs to the AAA ATPase family.	0.460
VPS4B	FIGNL2	ENSTGUP00000002118	ENSTGUP00000033661	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	Putative fidgetin-like protein 2.	0.479
VPS4B	H1A4C3_TAEGU	ENSTGUP00000002118	ENSTGUP00000021014	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.479