(15 nodes) (2018) Micro-RNAs, their target proteins, predispositions and the memory of filial imprinting. network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CPEB2	Cytoplasmic polyadenylation element binding protein 2. (833 aa)
	CCK	Putative preprocholecystokinin variant 2. (130 aa)
	CPEB4	Cytoplasmic polyadenylation element binding protein 4. (711 aa)
	DNM1	Dynamin 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (852 aa)
	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase. (527 aa)
	PAPOLA	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (739 aa)
	PCMTD2	Uncharacterized protein. (1354 aa)
	MFN1	Mitofusin 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (740 aa)
	HNRNPA2B1	Heterogeneous nuclear ribonucleoprotein A2/B1. (349 aa)
	SUMO1	Small ubiquitin-related modifier. (101 aa)
	PXDN	Peroxidasin. (1486 aa)
	CPEB3	Cytoplasmic polyadenylation element binding protein 3. (816 aa)
	PAPOLG	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (759 aa)
	FOS	Fos proto-oncogene, AP-1 transcription factor subunit. (370 aa)
	H0ZEH8_TAEGU	Small ubiquitin-related modifier. (368 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCK	FOS	ENSTGUP00000004812	ENSTGUP00000029395	Putative preprocholecystokinin variant 2.	Fos proto-oncogene, AP-1 transcription factor subunit.	0.500
CCK	GAPDH	ENSTGUP00000004812	ENSTGUP00000013730	Putative preprocholecystokinin variant 2.	Glyceraldehyde-3-phosphate dehydrogenase.	0.440
CCK	PCMTD2	ENSTGUP00000004812	ENSTGUP00000007617	Putative preprocholecystokinin variant 2.	Uncharacterized protein.	0.482
CCK	PXDN	ENSTGUP00000004812	ENSTGUP00000031647	Putative preprocholecystokinin variant 2.	Peroxidasin.	0.482
CPEB2	HNRNPA2B1	ENSTGUP00000010138	ENSTGUP00000036251	Cytoplasmic polyadenylation element binding protein 2.	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.505
CPEB2	PAPOLA	ENSTGUP00000010138	ENSTGUP00000013072	Cytoplasmic polyadenylation element binding protein 2.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.460
CPEB2	PAPOLG	ENSTGUP00000010138	ENSTGUP00000029404	Cytoplasmic polyadenylation element binding protein 2.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.464
CPEB3	DNM1	ENSTGUP00000030332	ENSTGUP00000021977	Cytoplasmic polyadenylation element binding protein 3.	Dynamin 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.406
CPEB3	HNRNPA2B1	ENSTGUP00000030332	ENSTGUP00000036251	Cytoplasmic polyadenylation element binding protein 3.	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.509
CPEB3	PAPOLA	ENSTGUP00000030332	ENSTGUP00000013072	Cytoplasmic polyadenylation element binding protein 3.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.430
CPEB3	PAPOLG	ENSTGUP00000030332	ENSTGUP00000029404	Cytoplasmic polyadenylation element binding protein 3.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.435
CPEB4	HNRNPA2B1	ENSTGUP00000000338	ENSTGUP00000036251	Cytoplasmic polyadenylation element binding protein 4.	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.505
CPEB4	PAPOLA	ENSTGUP00000000338	ENSTGUP00000013072	Cytoplasmic polyadenylation element binding protein 4.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.460
CPEB4	PAPOLG	ENSTGUP00000000338	ENSTGUP00000029404	Cytoplasmic polyadenylation element binding protein 4.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.464
DNM1	CPEB3	ENSTGUP00000021977	ENSTGUP00000030332	Dynamin 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Cytoplasmic polyadenylation element binding protein 3.	0.406
DNM1	HNRNPA2B1	ENSTGUP00000021977	ENSTGUP00000036251	Dynamin 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.485
DNM1	MFN1	ENSTGUP00000021977	ENSTGUP00000020652	Dynamin 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Mitofusin 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.659
FOS	CCK	ENSTGUP00000029395	ENSTGUP00000004812	Fos proto-oncogene, AP-1 transcription factor subunit.	Putative preprocholecystokinin variant 2.	0.500
FOS	PCMTD2	ENSTGUP00000029395	ENSTGUP00000007617	Fos proto-oncogene, AP-1 transcription factor subunit.	Uncharacterized protein.	0.405
FOS	PXDN	ENSTGUP00000029395	ENSTGUP00000031647	Fos proto-oncogene, AP-1 transcription factor subunit.	Peroxidasin.	0.405