23 items (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100223114	ATP binding cassette subfamily A member 10. (1630 aa)
	TJP2	Uncharacterized protein; Belongs to the MAGUK family. (1173 aa)
	ABCG1	ABC transporter domain-containing protein. (666 aa)
	ABCC6	ATP binding cassette subfamily C member 6. (1510 aa)
	ABCC8	ATP binding cassette subfamily C member 8. (1620 aa)
	ABCG5	ATP binding cassette subfamily G member 5. (641 aa)
	ATP8B1	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1252 aa)
	ANO8	Anoctamin. (1321 aa)
	LOC100225528	Uncharacterized protein. (854 aa)
	ABCA4	ATP binding cassette subfamily A member 4. (2235 aa)
	ABCD4	ATP binding cassette subfamily D member 4. (608 aa)
	ABCC5	ATP binding cassette subfamily C member 5. (1475 aa)
	ABCC3	Uncharacterized protein. (1467 aa)
	GPT2	Glutamic--pyruvic transaminase 2. (552 aa)
	ABCB11	ATP binding cassette subfamily B member 11. (1351 aa)
	ABCC9	Uncharacterized protein. (1574 aa)
	ABCA1	Uncharacterized protein. (2261 aa)
	ABCG2	ATP binding cassette subfamily G member 2 (Junior blood group). (663 aa)
	ABCA2	ATP binding cassette subfamily A member 2. (2509 aa)
	ABCB5	Uncharacterized protein. (1311 aa)
	ABCE1	ATP binding cassette subfamily E member 1. (594 aa)
	ABCA12	Uncharacterized protein. (3979 aa)
	ABCA5	ABC transporter domain-containing protein. (1646 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA12	ABCC3	ENSTGUP00000003025	ENSTGUP00000009479	Uncharacterized protein.	Uncharacterized protein.	0.405
ABCA12	ABCC5	ENSTGUP00000003025	ENSTGUP00000010411	Uncharacterized protein.	ATP binding cassette subfamily C member 5.	0.448
ABCA12	ABCC6	ENSTGUP00000003025	ENSTGUP00000005915	Uncharacterized protein.	ATP binding cassette subfamily C member 6.	0.422
ABCA12	ABCC8	ENSTGUP00000003025	ENSTGUP00000018402	Uncharacterized protein.	ATP binding cassette subfamily C member 8.	0.581
ABCA12	ABCC9	ENSTGUP00000003025	ENSTGUP00000035698	Uncharacterized protein.	Uncharacterized protein.	0.577
ABCA12	ABCD4	ENSTGUP00000003025	ENSTGUP00000012485	Uncharacterized protein.	ATP binding cassette subfamily D member 4.	0.595
ABCA12	ABCE1	ENSTGUP00000003025	ENSTGUP00000002783	Uncharacterized protein.	ATP binding cassette subfamily E member 1.	0.433
ABCA12	LOC100225528	ENSTGUP00000003025	ENSTGUP00000021564	Uncharacterized protein.	Uncharacterized protein.	0.596
ABCA2	ABCC5	ENSTGUP00000002475	ENSTGUP00000010411	ATP binding cassette subfamily A member 2.	ATP binding cassette subfamily C member 5.	0.467
ABCA2	ABCC8	ENSTGUP00000002475	ENSTGUP00000018402	ATP binding cassette subfamily A member 2.	ATP binding cassette subfamily C member 8.	0.431
ABCA2	ABCD4	ENSTGUP00000002475	ENSTGUP00000012485	ATP binding cassette subfamily A member 2.	ATP binding cassette subfamily D member 4.	0.530
ABCA5	ABCC9	ENSTGUP00000004100	ENSTGUP00000035698	ABC transporter domain-containing protein.	Uncharacterized protein.	0.579
ABCA5	ABCD4	ENSTGUP00000004100	ENSTGUP00000012485	ABC transporter domain-containing protein.	ATP binding cassette subfamily D member 4.	0.599
ABCB11	ABCC3	ENSTGUP00000007872	ENSTGUP00000009479	ATP binding cassette subfamily B member 11.	Uncharacterized protein.	0.489
ABCB11	ABCC5	ENSTGUP00000007872	ENSTGUP00000010411	ATP binding cassette subfamily B member 11.	ATP binding cassette subfamily C member 5.	0.440
ABCB11	ABCC6	ENSTGUP00000007872	ENSTGUP00000005915	ATP binding cassette subfamily B member 11.	ATP binding cassette subfamily C member 6.	0.506
ABCB11	ABCC8	ENSTGUP00000007872	ENSTGUP00000018402	ATP binding cassette subfamily B member 11.	ATP binding cassette subfamily C member 8.	0.508
ABCB11	ABCC9	ENSTGUP00000007872	ENSTGUP00000035698	ATP binding cassette subfamily B member 11.	Uncharacterized protein.	0.506
ABCB11	ABCE1	ENSTGUP00000007872	ENSTGUP00000002783	ATP binding cassette subfamily B member 11.	ATP binding cassette subfamily E member 1.	0.435
ABCB11	ANO8	ENSTGUP00000007872	ENSTGUP00000027808	ATP binding cassette subfamily B member 11.	Anoctamin.	0.502