STRINGSTRING
PABPC1L PABPC1L RBM15B RBM15B RNPC3 RNPC3 TAF15 TAF15 RBM8A RBM8A NIFK NIFK RALY RALY ALYREF ALYREF LOC100232298 LOC100232298 TARDBP TARDBP DAZL DAZL HNRNPD HNRNPD TRA2A TRA2A IGF2BP3 IGF2BP3 RBMX RBMX ENSTGUP00000002155 ENSTGUP00000002155 RBM17 RBM17 SFPQ SFPQ CELF4 CELF4 G3BP2 G3BP2 PPIE PPIE PABPC4 PABPC4 PTBP3 PTBP3 HNRNPM HNRNPM HNRNPR HNRNPR DAZAP1 DAZAP1 RBM22 RBM22 SRSF4 SRSF4 G3BP1 G3BP1 TRNAU1AP TRNAU1AP RBM33 RBM33 CELF5 CELF5 LOC100229022 LOC100229022 H0YQF3_TAEGU H0YQF3_TAEGU CPEB4 CPEB4 PPARGC1B PPARGC1B RBM7 RBM7 RBM27 RBM27 REXO5 REXO5 ENOX2 ENOX2 RBM20 RBM20 BOLL BOLL ENSTGUP00000036831 ENSTGUP00000036831 MTHFSD MTHFSD ENSTGUP00000036334 ENSTGUP00000036334 RBFOX2 RBFOX2 HNRNPA2B1 HNRNPA2B1 ENSTGUP00000036144 ENSTGUP00000036144 RBM38 RBM38 SNRNP70 SNRNP70 MARF1 MARF1 RBMS1 RBMS1 RBMS3 RBMS3 PPARGC1A PPARGC1A DND1 DND1 RBPMS2 RBPMS2 ENSTGUP00000034180 ENSTGUP00000034180 ELAVL2 ELAVL2 RBM12B RBM12B SNRPB2 SNRPB2 ENSTGUP00000033657 ENSTGUP00000033657 ENSTGUP00000033435 ENSTGUP00000033435 LARP4 LARP4 ENSTGUP00000033225 ENSTGUP00000033225 ENSTGUP00000032876 ENSTGUP00000032876 CELF6 CELF6 ELAVL3 ELAVL3 ENSTGUP00000032580 ENSTGUP00000032580 ENSTGUP00000032540 ENSTGUP00000032540 RBPMS RBPMS CPSF6 CPSF6 LOC100226582 LOC100226582 LARP4B LARP4B SRSF10 SRSF10 LOC115492045 LOC115492045 ENSTGUP00000031233 ENSTGUP00000031233 MATR3 MATR3 RBM39 RBM39 CPEB3 CPEB3 SRSF6 SRSF6 LOC100218449 LOC100218449 ENSTGUP00000030204 ENSTGUP00000030204 RBM18 RBM18 PUF60 PUF60 ENSTGUP00000029642 ENSTGUP00000029642 RBM46 RBM46 NONO NONO CELF1 CELF1 HNRNPH1 HNRNPH1 TRMT2A TRMT2A EWSR1 EWSR1 HNRNPDL HNRNPDL SRSF1 SRSF1 CPEB1 CPEB1 CSTF2 CSTF2 RBM6 RBM6 PTBP2 PTBP2 RBM12 RBM12 KLHL3 KLHL3 SCAF8 SCAF8 EIF4H EIF4H EIF4B EIF4B U2SURP U2SURP PARP10 PARP10 GRSF1 GRSF1 ENSTGUP00000025925 ENSTGUP00000025925 UHMK1 UHMK1 ALKBH8 ALKBH8 PABPN1L PABPN1L HNRNPA3 HNRNPA3 TRA2B TRA2B ENSTGUP00000025126 ENSTGUP00000025126 H1A2Q8_TAEGU H1A2Q8_TAEGU SF3B4 SF3B4 SRSF7 SRSF7 U2AF1 U2AF1 ELAVL4 ELAVL4 RNPS1 RNPS1 ENSTGUP00000024438 ENSTGUP00000024438 ENSTGUP00000024367 ENSTGUP00000024367 PABPC1 PABPC1 LOC100220017 LOC100220017 U2AF2 U2AF2 IGF2BP2 IGF2BP2 ENSTGUP00000023826 ENSTGUP00000023826 ENSTGUP00000023662 ENSTGUP00000023662 ELAVL1 ELAVL1 ENSTGUP00000023392 ENSTGUP00000023392 SRSF2 SRSF2 CELF3 CELF3 LOC100229913 LOC100229913 ENSTGUP00000022741 ENSTGUP00000022741 PTBP1 PTBP1 RAVER2 RAVER2 ENSTGUP00000022480 ENSTGUP00000022480 MSI1 MSI1 TNRC6A TNRC6A LOC100190722 LOC100190722 RBFOX1 RBFOX1 SNRPA SNRPA HTATSF1 HTATSF1 RBM24 RBM24 NELFE NELFE ENSTGUP00000020798 ENSTGUP00000020798 SREK1 SREK1 H1A2P2_TAEGU H1A2P2_TAEGU RBM11 RBM11 ENSTGUP00000020059 ENSTGUP00000020059 HNRNPH3 HNRNPH3 RBM28 RBM28 HNRNPA1 HNRNPA1 CIRBP CIRBP RBM47 RBM47 LARP7 LARP7 ENSTGUP00000019338 ENSTGUP00000019338 SSB SSB HNRNPAB HNRNPAB CELF2 CELF2 LOC115492046 LOC115492046 TIA1 TIA1 LOC100225495 LOC100225495 IGF2BP1 IGF2BP1 H1A245_TAEGU H1A245_TAEGU SCAF4 SCAF4 SF3B6 SF3B6 RBM26 RBM26 SYNCRIP SYNCRIP ENOX1 ENOX1 SLIRP SLIRP ESRP1 ESRP1 RALYL RALYL SRSF5 SRSF5 PSPC1 PSPC1 RBM25 RBM25 TIAL1 TIAL1 SYNJ2 SYNJ2 PPIL4 PPIL4 SRSF11-2 SRSF11-2 RBM34 RBM34 RAVER2-2 RAVER2-2 PPRC1 PPRC1 CPEB2 CPEB2 NCL NCL POLDIP3 POLDIP3 CNOT4 CNOT4 RBM45 RBM45 RBM19 RBM19 NCBP2 NCBP2 MSI2 MSI2 EIF3B EIF3B TNRC6C TNRC6C MYEF2 MYEF2 SART3 SART3 CPSF7 CPSF7 RBM41 RBM41 RBM5 RBM5 SETD1B SETD1B SLTM SLTM NCOA5 NCOA5 ZCRB1 ZCRB1 NOL8 NOL8 SNRNP35 SNRNP35 RBMX2 RBMX2 A1CF A1CF ESRP2 ESRP2 RRP7A RRP7A SPEN SPEN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
RBM15BRNA binding motif protein 15B. (916 aa)
RNPC3RRM domain-containing protein. (534 aa)
TAF15TATA-box binding protein associated factor 15. (471 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (199 aa)
NIFKNucleolar protein interacting with the FHA domain of MKI67. (257 aa)
RALYRALY heterogeneous nuclear ribonucleoprotein. (432 aa)
ALYREFTHO complex subunit 4; Export adapter involved in nuclear export of spliced and unspliced mRNA. Binds mRNA which is thought to be transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway). Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap- dependent manner to a regio [...] (254 aa)
LOC100232298La-related protein 4 isoform X1. (806 aa)
TARDBPTAR DNA binding protein. (414 aa)
DAZLRRM domain-containing protein. (292 aa)
HNRNPDHeterogeneous nuclear ribonucleoprotein D. (511 aa)
TRA2ATransformer 2 alpha homolog. (276 aa)
IGF2BP3Uncharacterized protein. (584 aa)
RBMXRRM domain-containing protein. (385 aa)
ENSTGUP00000002155annotation not available (261 aa)
RBM17RNA binding motif protein 17. (399 aa)
SFPQSplicing factor proline and glutamine rich. (639 aa)
CELF4CUGBP Elav-like family member 4. (365 aa)
G3BP2G3BP stress granule assembly factor 2. (482 aa)
PPIEPeptidylprolyl isomerase E. (301 aa)
PABPC4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (631 aa)
PTBP3Polypyrimidine tract binding protein 3. (517 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (867 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (693 aa)
DAZAP1Uncharacterized protein. (409 aa)
RBM22RNA binding motif protein 22. (420 aa)
SRSF4Serine and arginine rich splicing factor 4. (461 aa)
G3BP1G3BP stress granule assembly factor 1. (483 aa)
TRNAU1APtRNA selenocysteine 1 associated protein 1. (287 aa)
RBM33RNA binding motif protein 33. (1191 aa)
CELF5CUGBP Elav-like family member 5. (514 aa)
LOC100229022Uncharacterized protein. (998 aa)
H0YQF3_TAEGUUncharacterized protein. (891 aa)
CPEB4Cytoplasmic polyadenylation element binding protein 4. (711 aa)
PPARGC1BPPARG coactivator 1 beta. (988 aa)
RBM7RRM domain-containing protein. (272 aa)
RBM27Uncharacterized protein. (1103 aa)
REXO5RNA exonuclease 5. (713 aa)
ENOX2Ecto-NOX disulfide-thiol exchanger 2. (784 aa)
RBM20RNA binding motif protein 20. (1238 aa)
BOLLBoule homolog, RNA binding protein. (302 aa)
ENSTGUP00000036831annotation not available (211 aa)
MTHFSDMethenyltetrahydrofolate synthetase domain containing. (390 aa)
ENSTGUP00000036334annotation not available (167 aa)
RBFOX2RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events. (459 aa)
HNRNPA2B1Heterogeneous nuclear ribonucleoprotein A2/B1. (349 aa)
ENSTGUP00000036144annotation not available (557 aa)
RBM38RNA binding motif protein 38. (214 aa)
SNRNP70U1 small nuclear ribonucleoprotein 70 kDa-like. (428 aa)
MARF1Meiosis regulator and mRNA stability factor 1. (1744 aa)
RBMS1RNA binding motif single stranded interacting protein 1. (403 aa)
RBMS3RNA binding motif single stranded interacting protein 3. (519 aa)
PPARGC1APPARG coactivator 1 alpha. (807 aa)
DND1RRM domain-containing protein. (334 aa)
RBPMS2RNA binding protein, mRNA processing factor 2. (238 aa)
ENSTGUP00000034180annotation not available (276 aa)
ELAVL2ELAV-like protein; Belongs to the RRM elav family. (381 aa)
RBM12BRNA binding motif protein 12B. (699 aa)
SNRPB2Uncharacterized protein. (225 aa)
ENSTGUP00000033657annotation not available (150 aa)
ENSTGUP00000033435annotation not available (961 aa)
LARP4La ribonucleoprotein domain family member 4. (896 aa)
ENSTGUP00000033225annotation not available (99 aa)
ENSTGUP00000032876annotation not available (680 aa)
CELF6RRM domain-containing protein. (480 aa)
ELAVL3RRM domain-containing protein. (382 aa)
ENSTGUP00000032580annotation not available (224 aa)
ENSTGUP00000032540annotation not available (238 aa)
RBPMSRNA binding protein, mRNA processing factor. (314 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (697 aa)
LOC100226582Uncharacterized protein. (1805 aa)
LARP4BHTH La-type RNA-binding domain-containing protein. (1793 aa)
SRSF10Serine and arginine rich splicing factor 10. (260 aa)
LOC115492045RNA-binding protein 14-like. (725 aa)
ENSTGUP00000031233annotation not available (391 aa)
MATR3Uncharacterized protein. (987 aa)
RBM39RNA binding motif protein 39. (518 aa)
CPEB3Cytoplasmic polyadenylation element binding protein 3. (816 aa)
SRSF6Serine and arginine rich splicing factor 6. (348 aa)
LOC100218449Poly(U) binding splicing factor 60. (529 aa)
ENSTGUP00000030204annotation not available (173 aa)
RBM18RNA binding motif protein 18. (190 aa)
PUF60Uncharacterized protein. (506 aa)
ENSTGUP00000029642annotation not available (341 aa)
RBM46RNA binding motif protein 46. (462 aa)
NONONon-POU domain containing octamer binding. (475 aa)
CELF1CUGBP Elav-like family member 1. (532 aa)
HNRNPH1Uncharacterized protein. (568 aa)
TRMT2ATRNA (uracil-5-)-methyltransferase homolog A. (639 aa)
EWSR1EWS RNA binding protein 1. (738 aa)
HNRNPDLHeterogeneous nuclear ribonucleoprotein D like. (323 aa)
SRSF1RRM domain-containing protein. (256 aa)
CPEB1Uncharacterized protein. (590 aa)
CSTF2Cleavage stimulation factor subunit 2. (595 aa)
RBM6RNA binding motif protein 6. (921 aa)
PTBP2Polypyrimidine tract binding protein 2. (564 aa)
RBM12RNA binding motif protein 12. (879 aa)
KLHL3Kelch like family member 3. (860 aa)
SCAF8SR-related CTD associated factor 8. (1395 aa)
EIF4HEukaryotic translation initiation factor 4H. (219 aa)
EIF4BEukaryotic translation initiation factor 4B. (633 aa)
U2SURPU2 snRNP associated SURP domain containing. (989 aa)
PARP10poly(ADP-ribose) polymerase family member 10. (1035 aa)
GRSF1G-rich RNA sequence binding factor 1. (433 aa)
ENSTGUP00000025925annotation not available (139 aa)
UHMK1U2AF homology motif kinase 1. (537 aa)
ALKBH8Uncharacterized protein. (773 aa)
PABPN1LUncharacterized protein. (244 aa)
HNRNPA3Heterogeneous nuclear ribonucleoprotein A3. (387 aa)
TRA2BRRM domain-containing protein. (291 aa)
ENSTGUP00000025126annotation not available (934 aa)
H1A2Q8_TAEGURRM domain-containing protein. (144 aa)
SF3B4Splicing factor 3b subunit 4. (690 aa)
SRSF7Uncharacterized protein. (421 aa)
U2AF1Putative U2 snRNP auxiliary factor small subunit variant 1. (270 aa)
ELAVL4ELAV-like protein; Belongs to the RRM elav family. (395 aa)
RNPS1RNA binding protein with serine rich domain 1. (361 aa)
ENSTGUP00000024438annotation not available (611 aa)
ENSTGUP00000024367annotation not available (262 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (681 aa)
LOC100220017Uncharacterized protein. (478 aa)
U2AF2U2 small nuclear RNA auxiliary factor 2. (478 aa)
IGF2BP2RRM domain-containing protein. (612 aa)
ENSTGUP00000023826annotation not available (100 aa)
ENSTGUP00000023662annotation not available (104 aa)
ELAVL1ELAV-like protein; Belongs to the RRM elav family. (464 aa)
ENSTGUP00000023392annotation not available (190 aa)
SRSF2RRM domain-containing protein. (221 aa)
CELF3Uncharacterized protein. (375 aa)
LOC100229913RRM domain-containing protein. (264 aa)
ENSTGUP00000022741annotation not available (138 aa)
PTBP1Polypyrimidine tract binding protein 1. (566 aa)
RAVER2Ribonucleoprotein PTB-binding 2. (629 aa)
ENSTGUP00000022480annotation not available (246 aa)
MSI1Musashi RNA binding protein 1. (456 aa)
TNRC6ATrinucleotide repeat containing adaptor 6A. (1946 aa)
LOC100190722Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (326 aa)
RBFOX1RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events. (413 aa)
SNRPAU1 small nuclear ribonucleoprotein A. (281 aa)
HTATSF1HIV-1 Tat specific factor 1. (451 aa)
RBM24RNA binding motif protein 24. (280 aa)
NELFENegative elongation factor complex member E. (428 aa)
ENSTGUP00000020798annotation not available (313 aa)
SREK1Splicing regulatory glutamic acid and lysine rich protein 1. (465 aa)
H1A2P2_TAEGURRM domain-containing protein. (232 aa)
RBM11Splicing regulator RBM11 isoform X3. (158 aa)
ENSTGUP00000020059annotation not available (417 aa)
HNRNPH3Heterogeneous nuclear ribonucleoprotein H3. (419 aa)
RBM28RNA binding motif protein 28. (533 aa)
HNRNPA1Heterogeneous nuclear ribonucleoprotein A1/A3. (288 aa)
CIRBPRRM domain-containing protein. (204 aa)
RBM47RNA binding motif protein 47. (648 aa)
LARP7La ribonucleoprotein domain family member 7. (590 aa)
ENSTGUP00000019338annotation not available (800 aa)
SSBPutative Sjogren syndrome antigen B variant 2. (407 aa)
HNRNPABHeterogeneous nuclear ribonucleoprotein A/B. (394 aa)
CELF2CUGBP Elav-like family member 2. (567 aa)
LOC115492046RNA-binding protein 14-like. (685 aa)
TIA1TIA1 cytotoxic granule associated RNA binding protein. (364 aa)
LOC100225495RNA binding motif protein 4. (368 aa)
IGF2BP1Insulin-like growth factor 2 mRNA-binding protein 1 isoform X1. (570 aa)
H1A245_TAEGURRM domain-containing protein. (188 aa)
SCAF4SR-related CTD associated factor 4. (1072 aa)
SF3B6Splicing factor 3b subunit 6. (161 aa)
RBM26RNA binding motif protein 26. (1010 aa)
SYNCRIPHeterogeneous nuclear ribonucleoprotein Q isoform X1. (562 aa)
ENOX1Ecto-NOX disulfide-thiol exchanger 1. (623 aa)
SLIRPSRA stem-loop interacting RNA binding protein. (106 aa)
ESRP1Epithelial splicing regulatory protein 1. (607 aa)
RALYLRALY RNA binding protein like. (320 aa)
SRSF5Serine and arginine rich splicing factor 5. (265 aa)
PSPC1Paraspeckle component 1. (525 aa)
RBM25Uncharacterized protein. (821 aa)
TIAL1TIA1 cytotoxic granule associated RNA binding protein like 1. (395 aa)
SYNJ2Synaptojanin 2. (1506 aa)
PPIL4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (479 aa)
SRSF11-2Serine and arginine rich splicing factor 11. (533 aa)
RBM34RNA binding motif protein 34. (232 aa)
RAVER2-2Ribonucleoprotein, PTB binding 2. (699 aa)
PPRC1RRM domain-containing protein. (1336 aa)
CPEB2Cytoplasmic polyadenylation element binding protein 2. (833 aa)
NCLUncharacterized protein. (690 aa)
POLDIP3RRM domain-containing protein. (416 aa)
CNOT4CCR4-NOT transcription complex subunit 4. (762 aa)
RBM45Uncharacterized protein. (468 aa)
RBM19RNA binding motif protein 19. (943 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
MSI2Musashi RNA binding protein 2. (324 aa)
EIF3BEukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (784 aa)
TNRC6CTrinucleotide repeat containing adaptor 6C. (1837 aa)
MYEF2Myelin expression factor 2. (540 aa)
SART3Spliceosome associated factor 3, U4/U6 recycling protein. (1011 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (685 aa)
RBM41RRM domain-containing protein. (419 aa)
RBM5RNA binding motif protein 5. (593 aa)
SETD1BUncharacterized protein. (2004 aa)
SLTMSAFB like transcription modulator. (1027 aa)
NCOA5Nuclear receptor coactivator 5. (697 aa)
ZCRB1Zinc finger CCHC-type and RNA binding motif containing 1. (216 aa)
NOL8Uncharacterized protein. (1172 aa)
SNRNP35RRM domain-containing protein. (263 aa)
RBMX2RNA binding motif protein X-linked 2. (315 aa)
A1CFAPOBEC1 complementation factor. (581 aa)
ESRP2Epithelial splicing regulatory protein 2. (727 aa)
RRP7ARibosomal RNA processing 7 homolog A. (275 aa)
SPENUncharacterized protein. (3581 aa)
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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