35 items (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEMA6A	Semaphorin 6A; Belongs to the semaphorin family. (1044 aa)
	ATRN	Attractin. (1413 aa)
	SEMA3C	Uncharacterized protein; Belongs to the semaphorin family. (751 aa)
	SEMA4G	Semaphorin 4G; Belongs to the semaphorin family. (844 aa)
	SEMA4D	Semaphorin 4D; Belongs to the semaphorin family. (1032 aa)
	ATRNL1	Uncharacterized protein. (1399 aa)
	SEMA3D	Uncharacterized protein; Belongs to the semaphorin family. (761 aa)
	PLXND1	Plexin D1. (1929 aa)
	SEMA7A	Sema domain-containing protein. (633 aa)
	SEMA3F	Semaphorin 3F; Belongs to the semaphorin family. (729 aa)
	PLXNB2	Plexin B2. (1881 aa)
	LOC101233268	Uncharacterized protein. (181 aa)
	SEMA4C	Sema domain-containing protein; Belongs to the semaphorin family. (907 aa)
	LOC100226999	Semaphorin-4C. (860 aa)
	SEMA6C	Semaphorin 6C. (963 aa)
	SEMA6B	Semaphorin-6B. (906 aa)
	PLXDC1	Plexin domain containing 1. (485 aa)
	PLXDC2	Plexin domain containing 2. (535 aa)
	PLXNA2	Plexin A2. (1895 aa)
	SEMA5B	Semaphorin 5B. (1092 aa)
	PLXNA4	Uncharacterized protein. (1892 aa)
	SEMA3A	Semaphorin 3A; Belongs to the semaphorin family. (820 aa)
	SEMA3E	Semaphorin 3E; Belongs to the semaphorin family. (775 aa)
	SEMA4A	Semaphorin 4A; Belongs to the semaphorin family. (779 aa)
	LOC100224101	Uncharacterized protein; Belongs to the semaphorin family. (765 aa)
	MST1R	Macrophage stimulating 1 receptor. (1419 aa)
	MET	MET proto-oncogene, receptor tyrosine kinase. (1385 aa)
	SEMA3G	Semaphorin 3G; Belongs to the semaphorin family. (771 aa)
	SEMA3B	Semaphorin 3B; Belongs to the semaphorin family. (755 aa)
	SEMA6D	Semaphorin 6D; Belongs to the semaphorin family. (1088 aa)
	SEMA5A	Semaphorin 5A. (1076 aa)
	PLXNA1	Plexin A1. (1898 aa)
	PLXNC1	Plexin C1. (1504 aa)
	PLXNB1	Plexin B1. (2206 aa)
	SEMA4B	Semaphorin 4B; Belongs to the semaphorin family. (830 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100224101	MET	ENSTGUP00000005102	ENSTGUP00000005389	Uncharacterized protein; Belongs to the semaphorin family.	MET proto-oncogene, receptor tyrosine kinase.	0.692
LOC100224101	MST1R	ENSTGUP00000005102	ENSTGUP00000005191	Uncharacterized protein; Belongs to the semaphorin family.	Macrophage stimulating 1 receptor.	0.692
LOC100224101	PLXND1	ENSTGUP00000005102	ENSTGUP00000028162	Uncharacterized protein; Belongs to the semaphorin family.	Plexin D1.	0.403
LOC100226999	MET	ENSTGUP00000034466	ENSTGUP00000005389	Semaphorin-4C.	MET proto-oncogene, receptor tyrosine kinase.	0.692
LOC100226999	MST1R	ENSTGUP00000034466	ENSTGUP00000005191	Semaphorin-4C.	Macrophage stimulating 1 receptor.	0.692
LOC100226999	PLXNA1	ENSTGUP00000034466	ENSTGUP00000008395	Semaphorin-4C.	Plexin A1.	0.478
LOC100226999	PLXNA2	ENSTGUP00000034466	ENSTGUP00000036875	Semaphorin-4C.	Plexin A2.	0.478
LOC100226999	PLXNA4	ENSTGUP00000034466	ENSTGUP00000002023	Semaphorin-4C.	Uncharacterized protein.	0.478
LOC100226999	PLXNB1	ENSTGUP00000034466	ENSTGUP00000008738	Semaphorin-4C.	Plexin B1.	0.493
LOC100226999	PLXNB2	ENSTGUP00000034466	ENSTGUP00000031621	Semaphorin-4C.	Plexin B2.	0.493
LOC100226999	PLXNC1	ENSTGUP00000034466	ENSTGUP00000008558	Semaphorin-4C.	Plexin C1.	0.478
LOC100226999	PLXND1	ENSTGUP00000034466	ENSTGUP00000028162	Semaphorin-4C.	Plexin D1.	0.571
MET	LOC100224101	ENSTGUP00000005389	ENSTGUP00000005102	MET proto-oncogene, receptor tyrosine kinase.	Uncharacterized protein; Belongs to the semaphorin family.	0.692
MET	LOC100226999	ENSTGUP00000005389	ENSTGUP00000034466	MET proto-oncogene, receptor tyrosine kinase.	Semaphorin-4C.	0.692
MET	MST1R	ENSTGUP00000005389	ENSTGUP00000005191	MET proto-oncogene, receptor tyrosine kinase.	Macrophage stimulating 1 receptor.	0.892
MET	PLXNA1	ENSTGUP00000005389	ENSTGUP00000008395	MET proto-oncogene, receptor tyrosine kinase.	Plexin A1.	0.447
MET	PLXNA2	ENSTGUP00000005389	ENSTGUP00000036875	MET proto-oncogene, receptor tyrosine kinase.	Plexin A2.	0.447
MET	PLXNA4	ENSTGUP00000005389	ENSTGUP00000002023	MET proto-oncogene, receptor tyrosine kinase.	Uncharacterized protein.	0.447
MET	PLXNB1	ENSTGUP00000005389	ENSTGUP00000008738	MET proto-oncogene, receptor tyrosine kinase.	Plexin B1.	0.744
MET	PLXNB2	ENSTGUP00000005389	ENSTGUP00000031621	MET proto-oncogene, receptor tyrosine kinase.	Plexin B2.	0.744