(3 nodes) Domain of unknown function (DUF3452) network (Taeniopygia guttata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RB1	RB transcriptional corepressor 1. (931 aa)
	RBL1	RB transcriptional corepressor like 1. (977 aa)
	RBL2	RB transcriptional corepressor like 2. (1126 aa)

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RB1	RBL1	ENSTGUP00000012584	ENSTGUP00000003373	RB transcriptional corepressor 1.	RB transcriptional corepressor like 1.	0.937
RB1	RBL2	ENSTGUP00000012584	ENSTGUP00000007689	RB transcriptional corepressor 1.	RB transcriptional corepressor like 2.	0.937
RBL1	RB1	ENSTGUP00000003373	ENSTGUP00000012584	RB transcriptional corepressor like 1.	RB transcriptional corepressor 1.	0.937
RBL1	RBL2	ENSTGUP00000003373	ENSTGUP00000007689	RB transcriptional corepressor like 1.	RB transcriptional corepressor like 2.	0.902
RBL2	RB1	ENSTGUP00000007689	ENSTGUP00000012584	RB transcriptional corepressor like 2.	RB transcriptional corepressor 1.	0.937
RBL2	RBL1	ENSTGUP00000007689	ENSTGUP00000003373	RB transcriptional corepressor like 2.	RB transcriptional corepressor like 1.	0.902