STRINGSTRING
HSPA8 HSPA8 CHERP CHERP SRSF4 SRSF4 RBM22 RBM22 HNRNPM HNRNPM BCAS2 BCAS2 DDX46 DDX46 PPIE PPIE SF3A3 SF3A3 NCBP1 NCBP1 ZMAT2 ZMAT2 SNRPC SNRPC RBM17 RBM17 RBMX RBMX EIF4A3 EIF4A3 PRPF18 PRPF18 PRPF4 PRPF4 TRA2A TRA2A DHX8 DHX8 ALYREF ALYREF SNRNP27 SNRNP27 RBM8A RBM8A PRPF3 PRPF3 PRPF38B PRPF38B DDX5 DDX5 SNRPB SNRPB PRPF8 PRPF8 SF3B3 SF3B3 CTNNBL1 CTNNBL1 H0Z9M7_TAEGU H0Z9M7_TAEGU PRPF6 PRPF6 BUD31 BUD31 CRNKL1 CRNKL1 DHX38 DHX38 LSM3 LSM3 HNRNPU HNRNPU NCBP2 NCBP2 SNRPA1 SNRPA1 PRPF38A PRPF38A MAGOH MAGOH WBP11 WBP11 SNRPD3 SNRPD3 THOC1 THOC1 SF3A1 SF3A1 SMNDC1 SMNDC1 SF3B5 SF3B5 RBM25 RBM25 SRSF5 SRSF5 CDC40 CDC40 SF3B6 SF3B6 CDC5L CDC5L H1A245_TAEGU H1A245_TAEGU PPIH PPIH USP39 USP39 SYF2 SYF2 HNRNPA1 HNRNPA1 SF3B1 SF3B1 SNRPA SNRPA SNRPF SNRPF LOC100190722 LOC100190722 SRSF2 SRSF2 EFTUD2 EFTUD2 SNRPD1 SNRPD1 LOC100220017 LOC100220017 TXNL4A TXNL4A SRSF7 SRSF7 SF3B4 SF3B4 TRA2B TRA2B HNRNPA3 HNRNPA3 U2SURP U2SURP RP9 RP9 XAB2 XAB2 THOC2 THOC2 DDX42 DDX42 DDX23 DDX23 SRSF1 SRSF1 LSM4-2 LSM4-2 HNRNPK HNRNPK SNW1 SNW1 ISY1 ISY1 H1A086_TAEGU H1A086_TAEGU LOC100218449 LOC100218449 SRSF6 SRSF6 LSM6 LSM6 LOC100224409 LOC100224409 SRSF10 SRSF10 DHX15 DHX15 AQR AQR SLU7 SLU7 LSM5 LSM5 LSM8 LSM8 SNU13 SNU13 SNRPB2 SNRPB2 DHX16 DHX16 PRPF19 PRPF19 HSPA2 HSPA2 CWC15 CWC15 PLRG1 PLRG1 CCDC12 CCDC12
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HSPA8Heat shock protein family A (Hsp70) member 8; Belongs to the heat shock protein 70 family. (646 aa)
CHERPCalcium homeostasis endoplasmic reticulum protein. (899 aa)
SRSF4Serine and arginine rich splicing factor 4. (461 aa)
RBM22RNA binding motif protein 22. (420 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (867 aa)
BCAS2Putative breast carcinoma amplified sequence 2. (226 aa)
DDX46Uncharacterized protein. (1049 aa)
PPIEPeptidylprolyl isomerase E. (301 aa)
SF3A3Splicing factor 3a subunit 3. (501 aa)
NCBP1Nuclear cap binding protein subunit 1. (794 aa)
ZMAT2Zinc finger matrin-type 2. (259 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
RBM17RNA binding motif protein 17. (399 aa)
RBMXRRM domain-containing protein. (385 aa)
EIF4A3Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the [...] (410 aa)
PRPF18SFM domain-containing protein. (351 aa)
PRPF4Pre-mRNA processing factor 4. (562 aa)
TRA2ATransformer 2 alpha homolog. (276 aa)
DHX8DEAH-box helicase 8. (1192 aa)
ALYREFTHO complex subunit 4; Export adapter involved in nuclear export of spliced and unspliced mRNA. Binds mRNA which is thought to be transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway). Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap- dependent manner to a regio [...] (254 aa)
SNRNP27Small nuclear ribonucleoprotein U4/U6.U5 subunit 27. (155 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (199 aa)
PRPF3Pre-mRNA processing factor 3. (684 aa)
PRPF38BUncharacterized protein. (546 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (781 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
PRPF8MPN domain-containing protein. (2335 aa)
SF3B3Splicing factor 3b subunit 3. (1171 aa)
CTNNBL1Catenin beta like 1. (586 aa)
H0Z9M7_TAEGUUncharacterized protein. (282 aa)
PRPF6Pre-mRNA processing factor 6. (941 aa)
BUD31Uncharacterized protein. (144 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (686 aa)
DHX38DEAH-box helicase 38. (1230 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U. (841 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
SNRPA1LRRcap domain-containing protein. (255 aa)
PRPF38APre-mRNA processing factor 38A. (312 aa)
MAGOHUncharacterized protein. (146 aa)
WBP11Uncharacterized protein. (649 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
THOC1THO complex 1. (740 aa)
SF3A1Splicing factor 3a subunit 1. (790 aa)
SMNDC1Survival motor neuron domain containing 1. (238 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
RBM25Uncharacterized protein. (821 aa)
SRSF5Serine and arginine rich splicing factor 5. (265 aa)
CDC40Cell division cycle 40. (581 aa)
SF3B6Splicing factor 3b subunit 6. (161 aa)
CDC5LCell division cycle 5 like. (803 aa)
H1A245_TAEGURRM domain-containing protein. (188 aa)
PPIHPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
USP39U4/U6.U5 tri-snRNP-associated protein 2. (651 aa)
SYF2Pre-mRNA-splicing factor SYF2. (320 aa)
HNRNPA1Heterogeneous nuclear ribonucleoprotein A1/A3. (288 aa)
SF3B1Splicing factor 3b subunit 1. (1301 aa)
SNRPAU1 small nuclear ribonucleoprotein A. (281 aa)
SNRPFUncharacterized protein. (132 aa)
LOC100190722Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (326 aa)
SRSF2RRM domain-containing protein. (221 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (972 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
LOC100220017Uncharacterized protein. (478 aa)
TXNL4AU5 snRNP protein, DIM1 family. (341 aa)
SRSF7Uncharacterized protein. (421 aa)
SF3B4Splicing factor 3b subunit 4. (690 aa)
TRA2BRRM domain-containing protein. (291 aa)
HNRNPA3Heterogeneous nuclear ribonucleoprotein A3. (387 aa)
U2SURPU2 snRNP associated SURP domain containing. (989 aa)
RP9Uncharacterized protein. (266 aa)
XAB2Pre-mRNA-splicing factor SYF1. (899 aa)
THOC2Uncharacterized protein. (1604 aa)
DDX42DEAD-box helicase 42. (1142 aa)
DDX23Probable ATP-dependent RNA helicase DDX23 isoform X1. (815 aa)
SRSF1RRM domain-containing protein. (256 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (150 aa)
HNRNPKHeterogeneous nuclear ribonucleoprotein K. (432 aa)
SNW1SNW domain containing 1. (538 aa)
ISY1Uncharacterized protein. (279 aa)
H1A086_TAEGUHA2 domain-containing protein. (1046 aa)
LOC100218449Poly(U) binding splicing factor 60. (529 aa)
SRSF6Serine and arginine rich splicing factor 6. (348 aa)
LSM6Putative LSM6 homolog U6 small nuclear RNA associated. (236 aa)
LOC100224409Uncharacterized protein. (2136 aa)
SRSF10Serine and arginine rich splicing factor 10. (260 aa)
DHX15DEAH-box helicase 15. (765 aa)
AQRAquarius intron-binding spliceosomal factor. (1466 aa)
SLU7SLU7 homolog, splicing factor. (580 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (200 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (109 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
SNRPB2Uncharacterized protein. (225 aa)
DHX16Helicase C-terminal domain-containing protein. (1011 aa)
PRPF19Pre-mRNA processing factor 19. (635 aa)
HSPA2A-kinase anchoring protein 5. (1048 aa)
CWC15Uncharacterized protein. (230 aa)
PLRG1WD_REPEATS_REGION domain-containing protein. (669 aa)
CCDC12Coiled-coil domain containing 12. (220 aa)
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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