32 items (Chryseobacterium scophthalmum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SIN96795.1	Helix-turn-helix domain-containing protein. (99 aa)
	SIN96810.1	Helix-turn-helix domain-containing protein. (103 aa)
	SIN96833.1	Protein of unknown function. (149 aa)
	SIN96841.1	Conjugative transposon protein TraO. (186 aa)
	SIN96860.1	Bacteroides conjugative transposon TraN protein. (297 aa)
	SIN96874.1	Bacteroides conjugative transposon TraM protein. (444 aa)
	SIN96902.1	Bacteroides conjugative transposon TraK protein. (207 aa)
	SIN96918.1	Protein of unknown function. (210 aa)
	SIN96934.1	Bacteroides conjugation system ATPase, TraG family. (834 aa)
	SIN96947.1	Protein of unknown function. (109 aa)
	SIN96959.1	Protein of unknown function. (101 aa)
	SIN97091.1	Protein of unknown function. (101 aa)
	SIN97102.1	Protein of unknown function. (134 aa)
	SIN97115.1	Cellulose biosynthesis protein BcsQ. (255 aa)
	SIN97128.1	Hypothetical protein. (143 aa)
	SIN97142.1	Relaxase/Mobilisation nuclease domain-containing protein. (428 aa)
	SIN97157.1	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase. (663 aa)
	SIN97272.1	Helicase conserved C-terminal domain-containing protein. (1807 aa)
	SIN97286.1	Protein of unknown function. (145 aa)
	SIO02356.1	Protein of unknown function. (149 aa)
	SIO02371.1	Conjugative transposon protein TraO. (186 aa)
	SIO02386.1	Bacteroides conjugative transposon TraN protein. (297 aa)
	SIO02405.1	Bacteroides conjugative transposon TraM protein. (439 aa)
	SIO02433.1	Bacteroides conjugative transposon TraK protein. (207 aa)
	SIO02448.1	Bacteroides conjugative transposon TraJ protein. (330 aa)
	SIO02460.1	Protein of unknown function. (210 aa)
	SIO02477.1	Bacteroides conjugation system ATPase, TraG family. (834 aa)
	SIO02491.1	Protein of unknown function. (109 aa)
	SIO02506.1	Protein of unknown function. (101 aa)
	SIO02606.1	Hypothetical protein. (145 aa)
	SIO02619.1	Relaxase/Mobilisation nuclease domain-containing protein. (429 aa)
	SIO02633.1	TraM recognition site of TraD and TraG. (666 aa)

Your Current Organism:

Chryseobacterium scophthalmum

NCBI taxonomy Id: 59733
Other names: ATCC 700039, C. scophthalmum, CCM 4109, CCUG 33454, CIP 104199, DSM 16779, Flavobacterium scophthalmum, LMG 13028, LMG:13028

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIN96795.1	SIN96810.1	SAMN05421769_1456	SAMN05421769_1457	Helix-turn-helix domain-containing protein.	Helix-turn-helix domain-containing protein.	0.821
SIN96795.1	SIN96833.1	SAMN05421769_1456	SAMN05421769_1459	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.815
SIN96795.1	SIN96841.1	SAMN05421769_1456	SAMN05421769_1460	Helix-turn-helix domain-containing protein.	Conjugative transposon protein TraO.	0.823
SIN96795.1	SIN96860.1	SAMN05421769_1456	SAMN05421769_1461	Helix-turn-helix domain-containing protein.	Bacteroides conjugative transposon TraN protein.	0.733
SIN96795.1	SIN96874.1	SAMN05421769_1456	SAMN05421769_1462	Helix-turn-helix domain-containing protein.	Bacteroides conjugative transposon TraM protein.	0.783
SIN96795.1	SIN96918.1	SAMN05421769_1456	SAMN05421769_1467	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.570
SIN96795.1	SIN96947.1	SAMN05421769_1456	SAMN05421769_1469	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.710
SIN96795.1	SIN97091.1	SAMN05421769_1456	SAMN05421769_1480	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.758
SIN96795.1	SIN97102.1	SAMN05421769_1456	SAMN05421769_1481	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.753
SIN96795.1	SIN97115.1	SAMN05421769_1456	SAMN05421769_1482	Helix-turn-helix domain-containing protein.	Cellulose biosynthesis protein BcsQ.	0.743
SIN96795.1	SIN97128.1	SAMN05421769_1456	SAMN05421769_1483	Helix-turn-helix domain-containing protein.	Hypothetical protein.	0.734
SIN96795.1	SIN97142.1	SAMN05421769_1456	SAMN05421769_1484	Helix-turn-helix domain-containing protein.	Relaxase/Mobilisation nuclease domain-containing protein.	0.649
SIN96795.1	SIN97272.1	SAMN05421769_1456	SAMN05421769_1494	Helix-turn-helix domain-containing protein.	Helicase conserved C-terminal domain-containing protein.	0.688
SIN96795.1	SIN97286.1	SAMN05421769_1456	SAMN05421769_1495	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.761
SIN96795.1	SIO02356.1	SAMN05421769_1456	SAMN05421769_1852	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.739
SIN96795.1	SIO02371.1	SAMN05421769_1456	SAMN05421769_1853	Helix-turn-helix domain-containing protein.	Conjugative transposon protein TraO.	0.748
SIN96795.1	SIO02386.1	SAMN05421769_1456	SAMN05421769_1854	Helix-turn-helix domain-containing protein.	Bacteroides conjugative transposon TraN protein.	0.630
SIN96795.1	SIO02405.1	SAMN05421769_1456	SAMN05421769_1855	Helix-turn-helix domain-containing protein.	Bacteroides conjugative transposon TraM protein.	0.714
SIN96795.1	SIO02448.1	SAMN05421769_1456	SAMN05421769_1858	Helix-turn-helix domain-containing protein.	Bacteroides conjugative transposon TraJ protein.	0.403
SIN96795.1	SIO02460.1	SAMN05421769_1456	SAMN05421769_1859	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.580

page 1 of 46

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About