(7 nodes) RNA polymerase II, core complex network (Agaricus bisporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K5VV09_AGABU	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
	K5W2E9_AGABU	RPOLD domain-containing protein. (380 aa)
	K5WBA1_AGABU	Uncharacterized protein. (99 aa)
	K5X3A1_AGABU	RNA_pol_L_2 domain-containing protein. (148 aa)
	K5XE37_AGABU	Uncharacterized protein. (170 aa)
	K5XJ33_AGABU	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1785 aa)
	K5Y7D9_AGABU	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1220 aa)

Your Current Organism:

Agaricus bisporus

NCBI taxonomy Id: 597362
Other names: A. bisporus var. burnettii JB137-S8, Agaricus bisporus var. burnettii JB137-S8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5VV09_AGABU	K5W2E9_AGABU	K5VV09	K5W2E9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RPOLD domain-containing protein.	0.999
K5VV09_AGABU	K5WBA1_AGABU	K5VV09	K5WBA1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
K5VV09_AGABU	K5X3A1_AGABU	K5VV09	K5X3A1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA_pol_L_2 domain-containing protein.	0.999
K5VV09_AGABU	K5XE37_AGABU	K5VV09	K5XE37	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
K5VV09_AGABU	K5XJ33_AGABU	K5VV09	K5XJ33	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
K5VV09_AGABU	K5Y7D9_AGABU	K5VV09	K5Y7D9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
K5W2E9_AGABU	K5VV09_AGABU	K5W2E9	K5VV09	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
K5W2E9_AGABU	K5WBA1_AGABU	K5W2E9	K5WBA1	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
K5W2E9_AGABU	K5X3A1_AGABU	K5W2E9	K5X3A1	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
K5W2E9_AGABU	K5XE37_AGABU	K5W2E9	K5XE37	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
K5W2E9_AGABU	K5XJ33_AGABU	K5W2E9	K5XJ33	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
K5W2E9_AGABU	K5Y7D9_AGABU	K5W2E9	K5Y7D9	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
K5WBA1_AGABU	K5VV09_AGABU	K5WBA1	K5VV09	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
K5WBA1_AGABU	K5W2E9_AGABU	K5WBA1	K5W2E9	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
K5WBA1_AGABU	K5X3A1_AGABU	K5WBA1	K5X3A1	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
K5WBA1_AGABU	K5XE37_AGABU	K5WBA1	K5XE37	Uncharacterized protein.	Uncharacterized protein.	0.999
K5WBA1_AGABU	K5XJ33_AGABU	K5WBA1	K5XJ33	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
K5WBA1_AGABU	K5Y7D9_AGABU	K5WBA1	K5Y7D9	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
K5X3A1_AGABU	K5VV09_AGABU	K5X3A1	K5VV09	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
K5X3A1_AGABU	K5W2E9_AGABU	K5X3A1	K5W2E9	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.999