(19 nodes) Thioredoxin domain network (Agaricus bisporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K5VPG1_AGABU	Thioredoxin domain-containing protein. (214 aa)
	K5VTK8_AGABU	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (180 aa)
	K5VW99_AGABU	Uncharacterized protein; Belongs to the protein disulfide isomerase family. (366 aa)
	K5VY80_AGABU	Thioredoxin domain-containing protein. (162 aa)
	K5W6G4_AGABU	Thioredoxin domain-containing protein. (156 aa)
	K5WB46_AGABU	Thioredoxin domain-containing protein. (169 aa)
	K5WRC0_AGABU	Glutaredoxin domain-containing protein. (241 aa)
	K5X1D2_AGABU	Thioredoxin domain-containing protein. (259 aa)
	K5X4D8_AGABU	Thioredoxin domain-containing protein. (249 aa)
	K5XA46_AGABU	Thioredoxin domain-containing protein. (71 aa)
	K5XAT3_AGABU	Proteasome endopeptidase complex. (457 aa)
	K5XE34_AGABU	Thioredoxin domain-containing protein. (262 aa)
	K5XFH1_AGABU	Uncharacterized protein. (568 aa)
	K5XFX2_AGABU	Uncharacterized protein. (521 aa)
	K5XL52_AGABU	Thioredoxin; Belongs to the thioredoxin family. (107 aa)
	K5XM96_AGABU	Thioredoxin domain-containing protein. (266 aa)
	K5XQZ1_AGABU	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (182 aa)
	K5XVB8_AGABU	Uncharacterized protein. (644 aa)
	K5Y1C9_AGABU	Thioredoxin domain-containing protein. (355 aa)

Your Current Organism:

Agaricus bisporus

NCBI taxonomy Id: 597362
Other names: A. bisporus var. burnettii JB137-S8, Agaricus bisporus var. burnettii JB137-S8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5VPG1_AGABU	K5VTK8_AGABU	K5VPG1	K5VTK8	Thioredoxin domain-containing protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.826
K5VPG1_AGABU	K5VW99_AGABU	K5VPG1	K5VW99	Thioredoxin domain-containing protein.	Uncharacterized protein; Belongs to the protein disulfide isomerase family.	0.652
K5VPG1_AGABU	K5VY80_AGABU	K5VPG1	K5VY80	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.536
K5VPG1_AGABU	K5W6G4_AGABU	K5VPG1	K5W6G4	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.933
K5VPG1_AGABU	K5WB46_AGABU	K5VPG1	K5WB46	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.961
K5VPG1_AGABU	K5WRC0_AGABU	K5VPG1	K5WRC0	Thioredoxin domain-containing protein.	Glutaredoxin domain-containing protein.	0.491
K5VPG1_AGABU	K5X1D2_AGABU	K5VPG1	K5X1D2	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.652
K5VPG1_AGABU	K5X4D8_AGABU	K5VPG1	K5X4D8	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.514
K5VPG1_AGABU	K5XA46_AGABU	K5VPG1	K5XA46	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.693
K5VPG1_AGABU	K5XE34_AGABU	K5VPG1	K5XE34	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.652
K5VPG1_AGABU	K5XFH1_AGABU	K5VPG1	K5XFH1	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.652
K5VPG1_AGABU	K5XFX2_AGABU	K5VPG1	K5XFX2	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.652
K5VPG1_AGABU	K5XL52_AGABU	K5VPG1	K5XL52	Thioredoxin domain-containing protein.	Thioredoxin; Belongs to the thioredoxin family.	0.963
K5VPG1_AGABU	K5XQZ1_AGABU	K5VPG1	K5XQZ1	Thioredoxin domain-containing protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.939
K5VPG1_AGABU	K5Y1C9_AGABU	K5VPG1	K5Y1C9	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.652
K5VTK8_AGABU	K5VPG1_AGABU	K5VTK8	K5VPG1	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	Thioredoxin domain-containing protein.	0.826
K5VTK8_AGABU	K5W6G4_AGABU	K5VTK8	K5W6G4	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	Thioredoxin domain-containing protein.	0.737
K5VTK8_AGABU	K5WB46_AGABU	K5VTK8	K5WB46	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	Thioredoxin domain-containing protein.	0.784
K5VTK8_AGABU	K5XL52_AGABU	K5VTK8	K5XL52	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	Thioredoxin; Belongs to the thioredoxin family.	0.709
K5VW99_AGABU	K5VPG1_AGABU	K5VW99	K5VPG1	Uncharacterized protein; Belongs to the protein disulfide isomerase family.	Thioredoxin domain-containing protein.	0.652