(27 nodes) Growth cone network (Habropoda laboriosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WH47_05055	Triple functional domain protein. (3031 aa)
	WH47_02975	Fasciclin-2. (817 aa)
	WH47_04838	Stathmin-4. (330 aa)
	WH47_02560	Netrin-A. (366 aa)
	WH47_02557	Netrin-A. (306 aa)
	WH47_02698	Exocyst complex component 4. (158 aa)
	WH47_09836	Coronin; Belongs to the WD repeat coronin family. (1178 aa)
	WH47_09529	E3 ubiquitin-protein ligase TRIM9. (727 aa)
	WH47_01321	Whirlin. (238 aa)
	WH47_02080	Uncharacterized protein. (503 aa)
	WH47_02173	CAP-Gly domain-containing linker protein 1. (1574 aa)
	WH47_08340	Dystonin. (8046 aa)
	WH47_08341	Uncharacterized protein. (86 aa)
	WH47_07539	Whirlin. (354 aa)
	WH47_10779	Roundabout like protein 2. (1339 aa)
	WH47_06452	CLIP-associating protein 1-A. (1301 aa)
	WH47_06451	CLIP-associating protein. (242 aa)
	WH47_03435	Shootin-1. (609 aa)
	WH47_12165	Disheveled-associated activator of morphogenesis 2. (1207 aa)
	WH47_10941	Inositol 1,4,5-trisphosphate receptor. (2988 aa)
	WH47_01004	Autism susceptibility gene 2 protein. (1227 aa)
	WH47_08794	Fez family zinc finger protein 2. (405 aa)
	WH47_10245	Protein extra bases. (315 aa)
	WH47_10150	Drebrin-like protein. (433 aa)
	WH47_09710	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (501 aa)
	WH47_10453	Serine/threonine-protein kinase Genghis Khan; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1760 aa)
	WH47_05627	Myosin heavy chain 95F; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1182 aa)

Your Current Organism:

Habropoda laboriosa

NCBI taxonomy Id: 597456
Other names: H. laboriosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WH47_02080	WH47_10453	A0A0L7RJ05	A0A0L7QMP4	Uncharacterized protein.	Serine/threonine-protein kinase Genghis Khan; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.447
WH47_02173	WH47_05627	A0A0L7RIY3	A0A0L7QQM7	CAP-Gly domain-containing linker protein 1.	Myosin heavy chain 95F; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.422
WH47_02173	WH47_06451	A0A0L7RIY3	A0A0L7RCX5	CAP-Gly domain-containing linker protein 1.	CLIP-associating protein.	0.587
WH47_02173	WH47_06452	A0A0L7RIY3	A0A0L7RCZ1	CAP-Gly domain-containing linker protein 1.	CLIP-associating protein 1-A.	0.587
WH47_02557	WH47_02560	A0A0L7QWE6	A0A0L7QW80	Netrin-A.	Netrin-A.	0.795
WH47_02557	WH47_02975	A0A0L7QWE6	A0A0L7QSU1	Netrin-A.	Fasciclin-2.	0.423
WH47_02557	WH47_05055	A0A0L7QWE6	A0A0L7QSK7	Netrin-A.	Triple functional domain protein.	0.434
WH47_02557	WH47_09529	A0A0L7QWE6	A0A0L7RDC1	Netrin-A.	E3 ubiquitin-protein ligase TRIM9.	0.549
WH47_02557	WH47_10779	A0A0L7QWE6	A0A0L7RDF4	Netrin-A.	Roundabout like protein 2.	0.609
WH47_02560	WH47_02557	A0A0L7QW80	A0A0L7QWE6	Netrin-A.	Netrin-A.	0.795
WH47_02698	WH47_12165	A0A0L7QXC3	A0A0L7RAH1	Exocyst complex component 4.	Disheveled-associated activator of morphogenesis 2.	0.442
WH47_02975	WH47_02557	A0A0L7QSU1	A0A0L7QWE6	Fasciclin-2.	Netrin-A.	0.423
WH47_02975	WH47_10779	A0A0L7QSU1	A0A0L7RDF4	Fasciclin-2.	Roundabout like protein 2.	0.487
WH47_05055	WH47_02557	A0A0L7QSK7	A0A0L7QWE6	Triple functional domain protein.	Netrin-A.	0.434
WH47_05055	WH47_10453	A0A0L7QSK7	A0A0L7QMP4	Triple functional domain protein.	Serine/threonine-protein kinase Genghis Khan; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.681
WH47_05627	WH47_02173	A0A0L7QQM7	A0A0L7RIY3	Myosin heavy chain 95F; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	CAP-Gly domain-containing linker protein 1.	0.422
WH47_05627	WH47_08340	A0A0L7QQM7	A0A0L7RGX0	Myosin heavy chain 95F; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Dystonin.	0.529
WH47_05627	WH47_08341	A0A0L7QQM7	A0A0L7RGU5	Myosin heavy chain 95F; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.529
WH47_06451	WH47_02173	A0A0L7RCX5	A0A0L7RIY3	CLIP-associating protein.	CAP-Gly domain-containing linker protein 1.	0.587
WH47_06451	WH47_06452	A0A0L7RCX5	A0A0L7RCZ1	CLIP-associating protein.	CLIP-associating protein 1-A.	0.898