(9 nodes) Positive regulation of DNA replication network (Habropoda laboriosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WH47_01506	Protein N-terminal asparagine amidohydrolase. (310 aa)
	WH47_04224	Protein chiffon. (1550 aa)
	WH47_07752	KH domain-containing protein C56G2.1. (583 aa)
	WH47_00480	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (532 aa)
	WH47_12209	Uncharacterized protein. (310 aa)
	WH47_00418	Single-stranded DNA-binding protein, mitochondrial. (107 aa)
	WH47_08989	Zinc finger protein 99. (1050 aa)
	WH47_07404	La-related protein 1. (1314 aa)
	WH47_00223	Bromodomain adjacent to zinc finger domain protein 1A. (1398 aa)

Your Current Organism:

Habropoda laboriosa

NCBI taxonomy Id: 597456
Other names: H. laboriosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WH47_00223	WH47_12209	A0A0L7R1H5	A0A0L7RAK6	Bromodomain adjacent to zinc finger domain protein 1A.	Uncharacterized protein.	0.674
WH47_00480	WH47_04224	A0A0L7QKB8	A0A0L7QV96	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	Protein chiffon.	0.786
WH47_04224	WH47_00480	A0A0L7QV96	A0A0L7QKB8	Protein chiffon.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.786
WH47_07404	WH47_07752	A0A0L7R650	A0A0L7QNG5	La-related protein 1.	KH domain-containing protein C56G2.1.	0.413
WH47_07752	WH47_07404	A0A0L7QNG5	A0A0L7R650	KH domain-containing protein C56G2.1.	La-related protein 1.	0.413
WH47_08989	WH47_12209	A0A0L7R761	A0A0L7RAK6	Zinc finger protein 99.	Uncharacterized protein.	0.509
WH47_12209	WH47_00223	A0A0L7RAK6	A0A0L7R1H5	Uncharacterized protein.	Bromodomain adjacent to zinc finger domain protein 1A.	0.674
WH47_12209	WH47_08989	A0A0L7RAK6	A0A0L7R761	Uncharacterized protein.	Zinc finger protein 99.	0.509