(9 nodes) Cardiac cell fate commitment network (Habropoda laboriosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WH47_11851	Pre-mRNA-splicing factor SYF1. (809 aa)
	WH47_04749	T-box transcription factor TBX20. (322 aa)
	WH47_02677	Transcriptional repressor p66-beta. (1133 aa)
	WH47_06831	Transcription factor GATA-4. (906 aa)
	WH47_09144	Steroid receptor seven-up, isoforms B/C. (483 aa)
	WH47_09145	Nuclear receptor subfamily 2 group F member 1-A. (268 aa)
	WH47_03011	Frizzled-5; Belongs to the G-protein coupled receptor Fz/Smo family. (662 aa)
	WH47_06830	GATA-binding factor A. (321 aa)
	WH47_04748	T-box protein H15. (191 aa)

Your Current Organism:

Habropoda laboriosa

NCBI taxonomy Id: 597456
Other names: H. laboriosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WH47_04748	WH47_06830	A0A0L7QXL3	A0A0L7RIU9	T-box protein H15.	GATA-binding factor A.	0.408
WH47_04748	WH47_06831	A0A0L7QXL3	A0A0L7RJ66	T-box protein H15.	Transcription factor GATA-4.	0.408
WH47_04749	WH47_06830	A0A0L7QXG7	A0A0L7RIU9	T-box transcription factor TBX20.	GATA-binding factor A.	0.408
WH47_04749	WH47_06831	A0A0L7QXG7	A0A0L7RJ66	T-box transcription factor TBX20.	Transcription factor GATA-4.	0.408
WH47_06830	WH47_04748	A0A0L7RIU9	A0A0L7QXL3	GATA-binding factor A.	T-box protein H15.	0.408
WH47_06830	WH47_04749	A0A0L7RIU9	A0A0L7QXG7	GATA-binding factor A.	T-box transcription factor TBX20.	0.408
WH47_06830	WH47_09144	A0A0L7RIU9	A0A0L7QMW5	GATA-binding factor A.	Steroid receptor seven-up, isoforms B/C.	0.401
WH47_06830	WH47_09145	A0A0L7RIU9	A0A0L7QN26	GATA-binding factor A.	Nuclear receptor subfamily 2 group F member 1-A.	0.401
WH47_06831	WH47_04748	A0A0L7RJ66	A0A0L7QXL3	Transcription factor GATA-4.	T-box protein H15.	0.408
WH47_06831	WH47_04749	A0A0L7RJ66	A0A0L7QXG7	Transcription factor GATA-4.	T-box transcription factor TBX20.	0.408
WH47_06831	WH47_09144	A0A0L7RJ66	A0A0L7QMW5	Transcription factor GATA-4.	Steroid receptor seven-up, isoforms B/C.	0.401
WH47_06831	WH47_09145	A0A0L7RJ66	A0A0L7QN26	Transcription factor GATA-4.	Nuclear receptor subfamily 2 group F member 1-A.	0.401
WH47_09144	WH47_06830	A0A0L7QMW5	A0A0L7RIU9	Steroid receptor seven-up, isoforms B/C.	GATA-binding factor A.	0.401
WH47_09144	WH47_06831	A0A0L7QMW5	A0A0L7RJ66	Steroid receptor seven-up, isoforms B/C.	Transcription factor GATA-4.	0.401
WH47_09145	WH47_06830	A0A0L7QN26	A0A0L7RIU9	Nuclear receptor subfamily 2 group F member 1-A.	GATA-binding factor A.	0.401
WH47_09145	WH47_06831	A0A0L7QN26	A0A0L7RJ66	Nuclear receptor subfamily 2 group F member 1-A.	Transcription factor GATA-4.	0.401