(17 nodes) Dendrite self-avoidance network (Habropoda laboriosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WH47_03347	Ras-like GTP-binding protein Rho1. (192 aa)
	WH47_09143	Serine/threonine-protein kinase tricorner; Belongs to the protein kinase superfamily. (464 aa)
	WH47_09141	Uncharacterized protein. (97 aa)
	WH47_02975	Fasciclin-2. (817 aa)
	WH47_03999	Brain-specific angiogenesis inhibitor 1. (1128 aa)
	WH47_04855	Vang-like protein. (572 aa)
	WH47_02680	Basigin. (444 aa)
	WH47_02201	Protein furry like protein. (3046 aa)
	WH47_04556	Down syndrome cell adhesion molecule-like protein Dscam2. (2168 aa)
	WH47_09840	Plexin-B. (1970 aa)
	WH47_07219	Down syndrome cell adhesion molecule-like protein Dscam2. (2222 aa)
	WH47_11785	Down syndrome cell adhesion molecule-like protein Dscam2. (2008 aa)
	WH47_09579	Protein turtle. (1359 aa)
	WH47_10863	Protocadherin-like wing polarity protein stan; Belongs to the G-protein coupled receptor 2 family. (3136 aa)
	WH47_09581	Protein turtle. (792 aa)
	WH47_09578	Uncharacterized protein. (175 aa)
	WH47_08369	Down syndrome cell adhesion molecule-like protein Dscam2. (3669 aa)

Your Current Organism:

Habropoda laboriosa

NCBI taxonomy Id: 597456
Other names: H. laboriosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WH47_02201	WH47_09141	A0A0L7QZ43	A0A0L7QMW2	Protein furry like protein.	Uncharacterized protein.	0.925
WH47_02201	WH47_09143	A0A0L7QZ43	A0A0L7QMT4	Protein furry like protein.	Serine/threonine-protein kinase tricorner; Belongs to the protein kinase superfamily.	0.925
WH47_03347	WH47_04855	A0A0L7RBE8	A0A0L7QWG2	Ras-like GTP-binding protein Rho1.	Vang-like protein.	0.760
WH47_03347	WH47_09141	A0A0L7RBE8	A0A0L7QMW2	Ras-like GTP-binding protein Rho1.	Uncharacterized protein.	0.678
WH47_03347	WH47_09143	A0A0L7RBE8	A0A0L7QMT4	Ras-like GTP-binding protein Rho1.	Serine/threonine-protein kinase tricorner; Belongs to the protein kinase superfamily.	0.678
WH47_03347	WH47_09840	A0A0L7RBE8	A0A0L7R3A5	Ras-like GTP-binding protein Rho1.	Plexin-B.	0.790
WH47_04855	WH47_03347	A0A0L7QWG2	A0A0L7RBE8	Vang-like protein.	Ras-like GTP-binding protein Rho1.	0.760
WH47_04855	WH47_09840	A0A0L7QWG2	A0A0L7R3A5	Vang-like protein.	Plexin-B.	0.520
WH47_04855	WH47_10863	A0A0L7QWG2	A0A0L7RDL1	Vang-like protein.	Protocadherin-like wing polarity protein stan; Belongs to the G-protein coupled receptor 2 family.	0.788
WH47_09141	WH47_02201	A0A0L7QMW2	A0A0L7QZ43	Uncharacterized protein.	Protein furry like protein.	0.925
WH47_09141	WH47_03347	A0A0L7QMW2	A0A0L7RBE8	Uncharacterized protein.	Ras-like GTP-binding protein Rho1.	0.678
WH47_09143	WH47_02201	A0A0L7QMT4	A0A0L7QZ43	Serine/threonine-protein kinase tricorner; Belongs to the protein kinase superfamily.	Protein furry like protein.	0.925
WH47_09143	WH47_03347	A0A0L7QMT4	A0A0L7RBE8	Serine/threonine-protein kinase tricorner; Belongs to the protein kinase superfamily.	Ras-like GTP-binding protein Rho1.	0.678
WH47_09840	WH47_03347	A0A0L7R3A5	A0A0L7RBE8	Plexin-B.	Ras-like GTP-binding protein Rho1.	0.790
WH47_09840	WH47_04855	A0A0L7R3A5	A0A0L7QWG2	Plexin-B.	Vang-like protein.	0.520
WH47_10863	WH47_04855	A0A0L7RDL1	A0A0L7QWG2	Protocadherin-like wing polarity protein stan; Belongs to the G-protein coupled receptor 2 family.	Vang-like protein.	0.788