(44 nodes) RNA polymerase network (Habropoda laboriosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WH47_03339	DNA-directed RNA polymerase III subunit RPC7-like. (216 aa)
	WH47_10667	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	WH47_03532	DUF2236 domain-containing protein. (340 aa)
	WH47_10789	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)
	WH47_07642	Mediator of RNA polymerase II transcription subunit 26. (516 aa)
	WH47_09430	DNA-directed RNA polymerase III subunit RPC5. (504 aa)
	WH47_09351	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	WH47_07909	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1704 aa)
	WH47_03571	DNA-directed RNA polymerase II subunit RPB3. (276 aa)
	WH47_06732	Uncharacterized protein. (145 aa)
	WH47_06793	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
	WH47_06731	DNA-directed RNA polymerase III subunit RPC4. (145 aa)
	WH47_06843	Death-inducer obliterator 1. (2404 aa)
	WH47_02174	DNA-directed RNA polymerase II subunit RPB11. (117 aa)
	WH47_11403	DNA-directed RNA polymerases I and III subunit RPAC1. (511 aa)
	WH47_07804	Transcription elongation factor S-II. (289 aa)
	WH47_07720	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (57 aa)
	WH47_05613	Uncharacterized protein. (227 aa)
	WH47_05633	DNA-directed RNA polymerase II subunit RPB1. (713 aa)
	WH47_05634	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
	WH47_06715	Uncharacterized protein. (650 aa)
	WH47_05751	Chromodomain-helicase-DNA-binding protein Mi-2 like protein. (1909 aa)
	WH47_02984	Protein LSM14 like protein B-B. (510 aa)
	WH47_02468	DNA-directed RNA polymerase I subunit RPA43. (728 aa)
	WH47_02657	DNA-directed RNA polymerase III subunit RPC8. (203 aa)
	WH47_12487	DNA-directed RNA polymerase II 16 kDa polypeptide. (104 aa)
	WH47_12488	Transcriptional adapter. (480 aa)
	WH47_01604	Putative DNA-directed RNA polymerases I and III subunit RPAC2. (87 aa)
	WH47_00222	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (311 aa)
	WH47_09797	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (155 aa)
	WH47_09951	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1028 aa)
	WH47_10241	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1135 aa)
	WH47_12762	DNA-directed RNA polymerase II subunit RPB7. (179 aa)
	WH47_12829	RBR-type E3 ubiquitin transferase. (420 aa)
	WH47_07326	RBR-type E3 ubiquitin transferase. (476 aa)
	WH47_07300	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (496 aa)
	WH47_11694	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	WH47_00143	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (130 aa)
	WH47_03340	DPH3 like protein. (84 aa)
	WH47_01410	Protein angel like protein 2. (545 aa)
	WH47_12666	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1440 aa)
	WH47_09701	DUF2236 domain-containing protein. (321 aa)
	WH47_09720	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (131 aa)
	WH47_09722	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (160 aa)

Your Current Organism:

Habropoda laboriosa

NCBI taxonomy Id: 597456
Other names: H. laboriosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WH47_00143	WH47_00222	A0A0L7R8W7	A0A0L7R1J8	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.997
WH47_00143	WH47_01604	A0A0L7R8W7	A0A0L7R0W5	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	Putative DNA-directed RNA polymerases I and III subunit RPAC2.	0.999
WH47_00143	WH47_02174	A0A0L7R8W7	A0A0L7RJD8	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase II subunit RPB11.	0.999
WH47_00143	WH47_02468	A0A0L7R8W7	A0A0L7QWV4	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase I subunit RPA43.	0.999
WH47_00143	WH47_02657	A0A0L7R8W7	A0A0L7QWZ6	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase III subunit RPC8.	0.998
WH47_00143	WH47_03339	A0A0L7R8W7	A0A0L7RBP1	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase III subunit RPC7-like.	0.992
WH47_00143	WH47_03532	A0A0L7R8W7	A0A0L7RC13	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DUF2236 domain-containing protein.	0.965
WH47_00143	WH47_03571	A0A0L7R8W7	A0A0L7RI70	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase II subunit RPB3.	0.999
WH47_00143	WH47_05633	A0A0L7R8W7	A0A0L7QQG3	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase II subunit RPB1.	0.982
WH47_00143	WH47_05634	A0A0L7R8W7	A0A0L7QQT6	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
WH47_00143	WH47_05751	A0A0L7R8W7	A0A0L7QSS6	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	Chromodomain-helicase-DNA-binding protein Mi-2 like protein.	0.783
WH47_00143	WH47_06715	A0A0L7R8W7	A0A0L7QRQ5	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	Uncharacterized protein.	0.977
WH47_00143	WH47_06731	A0A0L7R8W7	A0A0L7RIX2	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase III subunit RPC4.	0.997
WH47_00143	WH47_06732	A0A0L7R8W7	A0A0L7RI76	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	Uncharacterized protein.	0.977
WH47_00143	WH47_06793	A0A0L7R8W7	A0A0L7RIW8	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
WH47_00143	WH47_06843	A0A0L7R8W7	A0A0L7RJ18	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	Death-inducer obliterator 1.	0.820
WH47_00143	WH47_07300	A0A0L7R8W7	A0A0L7R636	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
WH47_00143	WH47_07642	A0A0L7R8W7	A0A0L7REM4	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	Mediator of RNA polymerase II transcription subunit 26.	0.974
WH47_00143	WH47_07720	A0A0L7R8W7	A0A0L7QPT3	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
WH47_00143	WH47_07804	A0A0L7R8W7	A0A0L7QNK5	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	Transcription elongation factor S-II.	0.990