(33 nodes) Mostly uncharacterized, incl. Four-carbon acid sugar kinase, N-terminal domain, and Carboxylic acid transport network (Paenibacillus glucanolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANA78510.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	ANA78511.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (148 aa)
	ANA78512.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	ANA78513.1	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	ANA83290.1	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (247 aa)
	clpP	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (193 aa)
	ANA78515.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
	ANA78760.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (66 aa)
	ANA78762.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	ANA78763.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	ANA78764.1	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	ANA78765.1	Sorbitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	ANA78766.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	ANA78767.1	Hrp-dependent type III effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	ANA78769.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	ANA78770.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1055 aa)
	ANA79607.1	Anion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)
	ANA79608.1	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	ANA79609.1	Two-component system sensor histidine kinase DcuS; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)
	ANA80336.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)
	ANA80337.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
	ANA80338.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	ANA80339.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)
	ANA80340.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	ANA80452.1	4-hydroxythreonine-4-phosphate dehydrogenase PdxA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PdxA family. (333 aa)
	ANA80453.1	Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	ANA80454.1	2-keto-3-deoxygluconate permease; Transports degraded pectin products into the bacterial cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	ANA80455.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	ANA80456.1	Mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	ANA81556.1	Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	ANA81557.1	Gluconate permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	garR	2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tartronate semialdehyde to glycerate; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	ANA81559.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)

Your Current Organism:

Paenibacillus glucanolyticus

NCBI taxonomy Id: 59843
Other names: ATCC 49278, Bacillus glucanolyticus, CCUG 28523, CIP 106935, DSM 5162, HSCC 171, IFO 15330, LMG 12239, LMG:12239, NBRC 15330, NCIMB 12809, NRRL B-14679, P. glucanolyticus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANA78510.1	ANA78511.1	A3958_00220	A3958_00225	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.958
ANA78510.1	ANA78512.1	A3958_00220	A3958_00230	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
ANA78510.1	ANA78513.1	A3958_00220	A3958_00235	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
ANA78510.1	ANA78763.1	A3958_00220	A3958_01555	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ANA78510.1	ANA78764.1	A3958_00220	A3958_01560	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ANA78510.1	ANA79608.1	A3958_00220	A3958_06255	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
ANA78510.1	ANA79609.1	A3958_00220	A3958_06260	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase DcuS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
ANA78510.1	ANA80336.1	A3958_00220	A3958_10295	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
ANA78510.1	ANA80337.1	A3958_00220	A3958_10300	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
ANA78510.1	ANA80338.1	A3958_00220	A3958_10305	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
ANA78510.1	ANA80339.1	A3958_00220	A3958_10310	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
ANA78510.1	ANA80340.1	A3958_00220	A3958_10315	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
ANA78511.1	ANA78510.1	A3958_00225	A3958_00220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
ANA78511.1	ANA78512.1	A3958_00225	A3958_00230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
ANA78511.1	ANA78513.1	A3958_00225	A3958_00235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
ANA78511.1	ANA80336.1	A3958_00225	A3958_10295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
ANA78511.1	ANA80338.1	A3958_00225	A3958_10305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
ANA78512.1	ANA78510.1	A3958_00230	A3958_00220	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
ANA78512.1	ANA78511.1	A3958_00230	A3958_00225	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.927
ANA78512.1	ANA78513.1	A3958_00230	A3958_00235	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797

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