STRINGSTRING
NAMH_0456 NAMH_0456 NAMH_0529 NAMH_0529 NAMH_0744 NAMH_0744 NAMH_0745 NAMH_0745 NAMH_0748 NAMH_0748 NAMH_0783 NAMH_0783 NAMH_1357 NAMH_1357 NAMH_1384 NAMH_1384 NAMH_1385 NAMH_1385 rimO rimO tilS tilS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
NAMH_0456Conserved hypothetical protein. (552 aa)
NAMH_0529Conserved hypothetical protein. (1296 aa)
NAMH_0744Hypothetical protein; Identified by glimmer; putative. (630 aa)
NAMH_0745Conserved hypothetical protein. (123 aa)
NAMH_07484-hydroxybenzoyl-CoA thioesterase domain protein. (134 aa)
NAMH_0783ATPase, ParA family; Identified by match to protein family HMM PF01656. (220 aa)
NAMH_1357DNA translocase FtsK; Identified by match to protein family HMM PF01580; Belongs to the FtsK/SpoIIIE/SftA family. (709 aa)
NAMH_1384Hypothetical protein; Identified by glimmer; putative. (1668 aa)
NAMH_1385Putative NADH dehydrogenase 5. (79 aa)
rimOConserved hypothetical protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (432 aa)
tilStRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase); Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. (317 aa)
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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