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NAMH_0019 NAMH_0019 NAMH_0080 NAMH_0080 NAMH_0134 NAMH_0134 NAMH_0146 NAMH_0146 fliQ fliQ NAMH_0300 NAMH_0300 NAMH_0301 NAMH_0301 NAMH_0356 NAMH_0356 NAMH_0361 NAMH_0361 NAMH_0362 NAMH_0362 NAMH_0364 NAMH_0364 NAMH_0441 NAMH_0441 fliR fliR NAMH_0486 NAMH_0486 NAMH_0487 NAMH_0487 fliS fliS NAMH_0590 NAMH_0590 flgG flgG NAMH_0614 NAMH_0614 NAMH_0667 NAMH_0667 NAMH_0679 NAMH_0679 rpoN rpoN NAMH_0824 NAMH_0824 NAMH_0829 NAMH_0829 flhA flhA fliL fliL NAMH_1023 NAMH_1023 NAMH_1064 NAMH_1064 NAMH_1099 NAMH_1099 fliG fliG fliF fliF NAMH_1120 NAMH_1120 fliP fliP NAMH_1161 NAMH_1161 NAMH_1162 NAMH_1162 flgH flgH NAMH_1345 NAMH_1345 fliM fliM NAMH_1347 NAMH_1347 NAMH_1348 NAMH_1348 NAMH_1349 NAMH_1349 NAMH_1350 NAMH_1350 NAMH_1352 NAMH_1352 NAMH_1353 NAMH_1353 NAMH_1358 NAMH_1358 NAMH_1366 NAMH_1366 NAMH_1397 NAMH_1397 NAMH_1443 NAMH_1443 NAMH_1444 NAMH_1444 NAMH_1445 NAMH_1445 NAMH_1446 NAMH_1446 flgE flgE flgI flgI NAMH_1467 NAMH_1467 flgK flgK NAMH_1510 NAMH_1510 flhB flhB NAMH_1611 NAMH_1611 NAMH_1612 NAMH_1612 fliE fliE flgC flgC flgB flgB NAMH_1734 NAMH_1734
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
NAMH_0019Putative CheA signal transduction histidine kinase, no good domain identification; Identified by match to protein family HMM PF01627. (128 aa)
NAMH_0080Chemotaxis sensory transducer; Identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (138 aa)
NAMH_0134Chemotaxis response regulator; Identified by match to protein family HMM PF00072. (125 aa)
NAMH_0146Pdp protein. (181 aa)
fliQFlagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (88 aa)
NAMH_0300Surface presentation of antigens (spoa) protein; Identified by match to protein family HMM PF01052. (103 aa)
NAMH_0301Conserved hypothetical protein. (253 aa)
NAMH_0356Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (651 aa)
NAMH_0361Chemotaxis protein ec 2.7.3; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. (316 aa)
NAMH_0362Chemotaxis protein CheA; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895. (834 aa)
NAMH_0364Purine-binding chemotaxis protein chew; Identified by match to protein family HMM PF01584. (172 aa)
NAMH_0441Mcp-domain signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (390 aa)
fliRFlagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (255 aa)
NAMH_0486Polar flagellin; Identified by match to protein family HMM PF03646. (126 aa)
NAMH_0487Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (568 aa)
fliSFlagellar protein FliS; Identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208. (124 aa)
NAMH_0590Putative flagellin; Identified by match to protein family HMM PF00669. (232 aa)
flgGFlagellar basal-body rod protein FlgG; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488; Belongs to the flagella basal body rod proteins family. (262 aa)
NAMH_0614Flagellar basal-body rod protein; Identified by match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family. (261 aa)
NAMH_0667Signal-transduction regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728. (371 aa)
NAMH_0679Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (532 aa)
rpoNRNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (410 aa)
NAMH_0824Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08376. (785 aa)
NAMH_0829Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. (199 aa)
flhAFlagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (683 aa)
fliLFlagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (173 aa)
NAMH_1023Flagellar hook FlgE; Identified by match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family. (91 aa)
NAMH_1064Mcp-signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (649 aa)
NAMH_1099Flagellar assembly protein FliH. (261 aa)
fliGFlagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207. (341 aa)
fliFFlagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (561 aa)
NAMH_1120Aerotaxis sensor; Identified by match to protein family HMM PF08447; match to protein family HMM TIGR00229. (168 aa)
fliPFlagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (242 aa)
NAMH_1161OmpA/MotB; Identified by match to protein family HMM PF00691. (258 aa)
NAMH_1162Motility protein A-flagellar motor component; Identified by match to protein family HMM PF01618. (255 aa)
flgHFlagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (237 aa)
NAMH_1345Flagellar protein FliY; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480. (270 aa)
fliMFlagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397. (356 aa)
NAMH_1347RNA polymerase sigma factor, sigma-F; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. (229 aa)
NAMH_1348Putative membrane protein. (111 aa)
NAMH_1349ATP-binding protein-atpases involved in chromosome partitioning; Identified by match to protein family HMM PF01656. (288 aa)
NAMH_1350Flagellar biosynthesis protein flhf flagella associated gtp-bindingprotein; Identified by match to protein family HMM PF00448; match to protein family HMM TIGR03499. (416 aa)
NAMH_1352Conserved hypothetical protein. (54 aa)
NAMH_1353Proline aminopeptidase; Identified by match to protein family HMM PF00557; Belongs to the peptidase M24B family. (338 aa)
NAMH_1358Flagellin family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (881 aa)
NAMH_1366Histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (315 aa)
NAMH_1397Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08376. (661 aa)
NAMH_1443Putative mcp-domain signal transduction protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (566 aa)
NAMH_1444Conserved hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop. (463 aa)
NAMH_1445Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. (223 aa)
NAMH_1446Flagellar basal body and hook protein; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429. (642 aa)
flgEFlagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; match to protein family HMM TIGR02489. (853 aa)
flgIFlagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (331 aa)
NAMH_1467Conserved hypothetical protein. (91 aa)
flgKFlagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. (727 aa)
NAMH_1510Diguanylate cyclase/phosphodiesterase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (655 aa)
flhBFlagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (351 aa)
NAMH_1611Major flagellin subunit FlaA_2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (493 aa)
NAMH_1612Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (489 aa)
fliEFlagellar hook-basal body complex protein (FliE); Identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205. (96 aa)
flgCFlagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family. (165 aa)
flgBFlagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (143 aa)
NAMH_1734Flagellum-specific ATP synthase; Identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496. (432 aa)
Your Current Organism:
Nautilia profundicola
NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH
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