Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NAMH_0838 | rpsB | NAMH_0838 | NAMH_0451 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.851 |
| NAMH_0838 | rpsC | NAMH_0838 | NAMH_1635 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.851 |
| NAMH_0838 | rpsD | NAMH_0838 | NAMH_1696 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.856 |
| NAMH_0838 | rpsE | NAMH_0838 | NAMH_1624 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.866 |
| NAMH_0838 | rpsG | NAMH_0838 | NAMH_0183 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.851 |
| NAMH_0838 | rpsH | NAMH_0838 | NAMH_1627 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.851 |
| NAMH_0838 | rpsN | NAMH_0838 | NAMH_1628 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.851 |
| NAMH_0838 | rpsP | NAMH_0838 | NAMH_1513 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.866 |
| NAMH_0838 | rpsQ | NAMH_0838 | NAMH_1632 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.870 |
| NAMH_0838 | rpsS | NAMH_0838 | NAMH_1637 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.851 |
| NAMH_0838 | rpsT | NAMH_0838 | NAMH_1394 | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.851 |
| rpsB | NAMH_0838 | NAMH_0451 | NAMH_0838 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Sigma 54 modulation protein/ribosomal protein S30EA; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. | 0.851 |
| rpsB | rpsC | NAMH_0451 | NAMH_1635 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rpsB | rpsD | NAMH_0451 | NAMH_1696 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| rpsB | rpsE | NAMH_0451 | NAMH_1624 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.998 |
| rpsB | rpsG | NAMH_0451 | NAMH_0183 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rpsB | rpsH | NAMH_0451 | NAMH_1627 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.998 |
| rpsB | rpsN | NAMH_0451 | NAMH_1628 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.998 |
| rpsB | rpsP | NAMH_0451 | NAMH_1513 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.998 |
| rpsB | rpsQ | NAMH_0451 | NAMH_1632 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
page 1 of 7