(10 nodes) Nitrogen metabolism network (Nautilia profundicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	glnA	Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653. (480 aa)
	NAMH_0508	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (206 aa)
	NAMH_0510	2-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060. (361 aa)
	napB	Periplasmic nitrate reductase, diahem cytochrome C subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (157 aa)
	napA	Periplasmic nitrate reductase, NapA large catalytic subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (937 aa)
	NAMH_0845	NAD-glutamate dehydrogenase family protein. (1006 aa)
	NAMH_1054	Glutamate synthase [NADPH] small chain; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318. (473 aa)
	hcp	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (473 aa)
	NAMH_1280	Conserved hypothetical protein. (510 aa)
	NAMH_1569	Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898. (1458 aa)

Your Current Organism:

Nautilia profundicola

NCBI taxonomy Id: 598659
Other names: N. profundicola AmH, Nautilia profundicola AmH, Nautilia profundicola str. AmH, Nautilia profundicola strain AmH, Nautilia sp. AmH, epsilon proteobacterium AmH

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAMH_0510	NAMH_1280	NAMH_0510	NAMH_1280	2-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060.	Conserved hypothetical protein.	0.900
NAMH_0510	NAMH_1569	NAMH_0510	NAMH_1569	2-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060.	Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.492
NAMH_0510	napA	NAMH_0510	NAMH_0556	2-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060.	Periplasmic nitrate reductase, NapA large catalytic subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.	0.900
NAMH_0510	napB	NAMH_0510	NAMH_0553	2-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060.	Periplasmic nitrate reductase, diahem cytochrome C subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.	0.900
NAMH_0845	NAMH_1054	NAMH_0845	NAMH_1054	NAD-glutamate dehydrogenase family protein.	Glutamate synthase [NADPH] small chain; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318.	0.910
NAMH_0845	NAMH_1569	NAMH_0845	NAMH_1569	NAD-glutamate dehydrogenase family protein.	Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.943
NAMH_0845	glnA	NAMH_0845	NAMH_0501	NAD-glutamate dehydrogenase family protein.	Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	0.913
NAMH_0845	hcp	NAMH_0845	NAMH_1074	NAD-glutamate dehydrogenase family protein.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.900
NAMH_1054	NAMH_0845	NAMH_1054	NAMH_0845	Glutamate synthase [NADPH] small chain; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318.	NAD-glutamate dehydrogenase family protein.	0.910
NAMH_1054	NAMH_1569	NAMH_1054	NAMH_1569	Glutamate synthase [NADPH] small chain; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318.	Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.999
NAMH_1054	glnA	NAMH_1054	NAMH_0501	Glutamate synthase [NADPH] small chain; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318.	Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	0.948
NAMH_1280	NAMH_0510	NAMH_1280	NAMH_0510	Conserved hypothetical protein.	2-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060.	0.900
NAMH_1280	hcp	NAMH_1280	NAMH_1074	Conserved hypothetical protein.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.912
NAMH_1280	napA	NAMH_1280	NAMH_0556	Conserved hypothetical protein.	Periplasmic nitrate reductase, NapA large catalytic subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.	0.944
NAMH_1280	napB	NAMH_1280	NAMH_0553	Conserved hypothetical protein.	Periplasmic nitrate reductase, diahem cytochrome C subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.	0.977
NAMH_1569	NAMH_0510	NAMH_1569	NAMH_0510	Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	2-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060.	0.492
NAMH_1569	NAMH_0845	NAMH_1569	NAMH_0845	Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	NAD-glutamate dehydrogenase family protein.	0.943
NAMH_1569	NAMH_1054	NAMH_1569	NAMH_1054	Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Glutamate synthase [NADPH] small chain; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318.	0.999
NAMH_1569	glnA	NAMH_1569	NAMH_0501	Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	0.983
NAMH_1569	napA	NAMH_1569	NAMH_0556	Glutamate synthase [NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Periplasmic nitrate reductase, NapA large catalytic subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.	0.667

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