5 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCN3B	Sodium voltage-gated channel beta subunit 3. (215 aa)
	SCN4B	Sodium voltage-gated channel beta subunit 4. (225 aa)
	SCN2B	Sodium voltage-gated channel beta subunit 2. (215 aa)
	LOC101819537	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (2040 aa)
	U3K3X5_FICAL	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1826 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101819537	SCN2B	ENSFALP00000007086	ENSFALP00000006205	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium voltage-gated channel beta subunit 2.	0.761
LOC101819537	SCN3B	ENSFALP00000007086	ENSFALP00000006000	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium voltage-gated channel beta subunit 3.	0.651
LOC101819537	SCN4B	ENSFALP00000007086	ENSFALP00000006190	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium voltage-gated channel beta subunit 4.	0.947
SCN2B	LOC101819537	ENSFALP00000006205	ENSFALP00000007086	Sodium voltage-gated channel beta subunit 2.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.761
SCN2B	SCN3B	ENSFALP00000006205	ENSFALP00000006000	Sodium voltage-gated channel beta subunit 2.	Sodium voltage-gated channel beta subunit 3.	0.805
SCN2B	SCN4B	ENSFALP00000006205	ENSFALP00000006190	Sodium voltage-gated channel beta subunit 2.	Sodium voltage-gated channel beta subunit 4.	0.697
SCN2B	U3K3X5_FICAL	ENSFALP00000006205	ENSFALP00000009729	Sodium voltage-gated channel beta subunit 2.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.776
SCN3B	LOC101819537	ENSFALP00000006000	ENSFALP00000007086	Sodium voltage-gated channel beta subunit 3.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.651
SCN3B	SCN2B	ENSFALP00000006000	ENSFALP00000006205	Sodium voltage-gated channel beta subunit 3.	Sodium voltage-gated channel beta subunit 2.	0.805
SCN3B	SCN4B	ENSFALP00000006000	ENSFALP00000006190	Sodium voltage-gated channel beta subunit 3.	Sodium voltage-gated channel beta subunit 4.	0.730
SCN3B	U3K3X5_FICAL	ENSFALP00000006000	ENSFALP00000009729	Sodium voltage-gated channel beta subunit 3.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.851
SCN4B	LOC101819537	ENSFALP00000006190	ENSFALP00000007086	Sodium voltage-gated channel beta subunit 4.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.947
SCN4B	SCN2B	ENSFALP00000006190	ENSFALP00000006205	Sodium voltage-gated channel beta subunit 4.	Sodium voltage-gated channel beta subunit 2.	0.697
SCN4B	SCN3B	ENSFALP00000006190	ENSFALP00000006000	Sodium voltage-gated channel beta subunit 4.	Sodium voltage-gated channel beta subunit 3.	0.730
SCN4B	U3K3X5_FICAL	ENSFALP00000006190	ENSFALP00000009729	Sodium voltage-gated channel beta subunit 4.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.696
U3K3X5_FICAL	SCN2B	ENSFALP00000009729	ENSFALP00000006205	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium voltage-gated channel beta subunit 2.	0.776
U3K3X5_FICAL	SCN3B	ENSFALP00000009729	ENSFALP00000006000	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium voltage-gated channel beta subunit 3.	0.851
U3K3X5_FICAL	SCN4B	ENSFALP00000009729	ENSFALP00000006190	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium voltage-gated channel beta subunit 4.	0.696