16 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	P3H4	Prolyl 3-hydroxylase family member 4 (non-enzymatic). (328 aa)
	COL8A2	Collagen type VIII alpha 2 chain. (432 aa)
	COL27A1	Fibrillar collagen NC1 domain-containing protein. (1253 aa)
	U3JJF8_FICAL	VWFA domain-containing protein. (1614 aa)
	COL3A1	Collagen type III alpha 1 chain. (1460 aa)
	P3H3	Prolyl 3-hydroxylase 3. (585 aa)
	CRTAP	Cartilage associated protein. (282 aa)
	COL8A1	Collagen type VIII alpha 1 chain. (739 aa)
	U3JUU3_FICAL	Fibrillar collagen NC1 domain-containing protein. (1810 aa)
	SERPINH1	Serpin family H member 1; Belongs to the serpin family. (408 aa)
	PCOLCE2	Procollagen C-endopeptidase enhancer 2. (296 aa)
	P3H2	Prolyl 3-hydroxylase 2. (583 aa)
	PPIC	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (174 aa)
	U3K581_FICAL	EMI domain-containing protein. (340 aa)
	PPIB	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (202 aa)
	P3H1	Prolyl 3-hydroxylase 1. (701 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COL27A1	COL8A1	ENSFALP00000001341	ENSFALP00000006030	Fibrillar collagen NC1 domain-containing protein.	Collagen type VIII alpha 1 chain.	0.408
COL27A1	PCOLCE2	ENSFALP00000001341	ENSFALP00000007373	Fibrillar collagen NC1 domain-containing protein.	Procollagen C-endopeptidase enhancer 2.	0.434
COL27A1	PPIB	ENSFALP00000001341	ENSFALP00000010221	Fibrillar collagen NC1 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.451
COL27A1	SERPINH1	ENSFALP00000001341	ENSFALP00000006892	Fibrillar collagen NC1 domain-containing protein.	Serpin family H member 1; Belongs to the serpin family.	0.521
COL27A1	U3JJF8_FICAL	ENSFALP00000001341	ENSFALP00000002912	Fibrillar collagen NC1 domain-containing protein.	VWFA domain-containing protein.	0.511
COL8A1	COL27A1	ENSFALP00000006030	ENSFALP00000001341	Collagen type VIII alpha 1 chain.	Fibrillar collagen NC1 domain-containing protein.	0.408
COL8A1	COL8A2	ENSFALP00000006030	ENSFALP00000000856	Collagen type VIII alpha 1 chain.	Collagen type VIII alpha 2 chain.	0.628
COL8A1	CRTAP	ENSFALP00000006030	ENSFALP00000005377	Collagen type VIII alpha 1 chain.	Cartilage associated protein.	0.424
COL8A1	P3H1	ENSFALP00000006030	ENSFALP00000010787	Collagen type VIII alpha 1 chain.	Prolyl 3-hydroxylase 1.	0.409
COL8A1	P3H2	ENSFALP00000006030	ENSFALP00000007714	Collagen type VIII alpha 1 chain.	Prolyl 3-hydroxylase 2.	0.409
COL8A1	P3H3	ENSFALP00000006030	ENSFALP00000004888	Collagen type VIII alpha 1 chain.	Prolyl 3-hydroxylase 3.	0.409
COL8A1	P3H4	ENSFALP00000006030	ENSFALP00000000645	Collagen type VIII alpha 1 chain.	Prolyl 3-hydroxylase family member 4 (non-enzymatic).	0.424
COL8A1	PPIB	ENSFALP00000006030	ENSFALP00000010221	Collagen type VIII alpha 1 chain.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.473
COL8A1	SERPINH1	ENSFALP00000006030	ENSFALP00000006892	Collagen type VIII alpha 1 chain.	Serpin family H member 1; Belongs to the serpin family.	0.591
COL8A1	U3JUU3_FICAL	ENSFALP00000006030	ENSFALP00000006547	Collagen type VIII alpha 1 chain.	Fibrillar collagen NC1 domain-containing protein.	0.413
COL8A2	COL8A1	ENSFALP00000000856	ENSFALP00000006030	Collagen type VIII alpha 2 chain.	Collagen type VIII alpha 1 chain.	0.628
COL8A2	U3K581_FICAL	ENSFALP00000000856	ENSFALP00000010185	Collagen type VIII alpha 2 chain.	EMI domain-containing protein.	0.435
CRTAP	COL8A1	ENSFALP00000005377	ENSFALP00000006030	Cartilage associated protein.	Collagen type VIII alpha 1 chain.	0.424
CRTAP	P3H1	ENSFALP00000005377	ENSFALP00000010787	Cartilage associated protein.	Prolyl 3-hydroxylase 1.	0.663
CRTAP	P3H2	ENSFALP00000005377	ENSFALP00000007714	Cartilage associated protein.	Prolyl 3-hydroxylase 2.	0.623