8 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMOX	Spermine oxidase. (535 aa)
	SMS	Spermine synthase. (388 aa)
	AZIN1	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (450 aa)
	ODC1	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (459 aa)
	OAZ2	Ornithine decarboxylase antizyme 2. (188 aa)
	SRM	Spermidine synthase; Belongs to the spermidine/spermine synthase family. (294 aa)
	AMD1	S-adenosylmethionine decarboxylase proenzyme. (341 aa)
	OAZ1	Ornithine decarboxylase antizyme 1. (218 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMD1	AZIN1	ENSFALP00000011262	ENSFALP00000006165	S-adenosylmethionine decarboxylase proenzyme.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.433
AMD1	ODC1	ENSFALP00000011262	ENSFALP00000006943	S-adenosylmethionine decarboxylase proenzyme.	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.616
AMD1	SMOX	ENSFALP00000011262	ENSFALP00000000176	S-adenosylmethionine decarboxylase proenzyme.	Spermine oxidase.	0.515
AMD1	SMS	ENSFALP00000011262	ENSFALP00000004352	S-adenosylmethionine decarboxylase proenzyme.	Spermine synthase.	0.989
AMD1	SRM	ENSFALP00000011262	ENSFALP00000010732	S-adenosylmethionine decarboxylase proenzyme.	Spermidine synthase; Belongs to the spermidine/spermine synthase family.	0.992
AZIN1	AMD1	ENSFALP00000006165	ENSFALP00000011262	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	S-adenosylmethionine decarboxylase proenzyme.	0.433
AZIN1	OAZ1	ENSFALP00000006165	ENSFALP00000014398	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Ornithine decarboxylase antizyme 1.	0.973
AZIN1	OAZ2	ENSFALP00000006165	ENSFALP00000010250	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Ornithine decarboxylase antizyme 2.	0.884
AZIN1	ODC1	ENSFALP00000006165	ENSFALP00000006943	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.630
AZIN1	SMS	ENSFALP00000006165	ENSFALP00000004352	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Spermine synthase.	0.629
AZIN1	SRM	ENSFALP00000006165	ENSFALP00000010732	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Spermidine synthase; Belongs to the spermidine/spermine synthase family.	0.647
OAZ1	AZIN1	ENSFALP00000014398	ENSFALP00000006165	Ornithine decarboxylase antizyme 1.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.973
OAZ1	ODC1	ENSFALP00000014398	ENSFALP00000006943	Ornithine decarboxylase antizyme 1.	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.978
OAZ2	AZIN1	ENSFALP00000010250	ENSFALP00000006165	Ornithine decarboxylase antizyme 2.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.884
OAZ2	ODC1	ENSFALP00000010250	ENSFALP00000006943	Ornithine decarboxylase antizyme 2.	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.871
OAZ2	SMS	ENSFALP00000010250	ENSFALP00000004352	Ornithine decarboxylase antizyme 2.	Spermine synthase.	0.430
ODC1	AMD1	ENSFALP00000006943	ENSFALP00000011262	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	S-adenosylmethionine decarboxylase proenzyme.	0.616
ODC1	AZIN1	ENSFALP00000006943	ENSFALP00000006165	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.630
ODC1	OAZ1	ENSFALP00000006943	ENSFALP00000014398	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Ornithine decarboxylase antizyme 1.	0.978
ODC1	OAZ2	ENSFALP00000006943	ENSFALP00000010250	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Ornithine decarboxylase antizyme 2.	0.871