87 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	U3KEH6_FICAL	VWFC domain-containing protein. (151 aa)
	COL13A1	Collagen type XIII alpha 1 chain. (629 aa)
	U3KFQ7_FICAL	LAM_G_DOMAIN domain-containing protein. (1372 aa)
	C1QL2	Complement C1q like 2. (306 aa)
	ELN	Elastin. (682 aa)
	ZP2	Zona pellucida glycoprotein 2. (707 aa)
	PRELP	Proline and arginine rich end leucine rich repeat protein. (371 aa)
	OPTC	Opticin. (328 aa)
	COL4A5	Collagen type IV alpha 5 chain. (1697 aa)
	COL4A6	Collagen type IV alpha 6 chain. (1692 aa)
	U3JC93_FICAL	Endostatin domain-containing protein. (1019 aa)
	LAMB3	Laminin subunit beta 3. (1169 aa)
	COL9A2	Collagen type IX alpha 2 chain. (667 aa)
	COL8A2	Collagen type VIII alpha 2 chain. (432 aa)
	LOC101817811	Uncharacterized protein. (1152 aa)
	MATN1	Matrilin 1. (741 aa)
	U3JEX9_FICAL	Fibrillar collagen NC1 domain-containing protein. (775 aa)
	COL27A1	Fibrillar collagen NC1 domain-containing protein. (1253 aa)
	LAMC3	Laminin subunit gamma 3. (1597 aa)
	COL5A1	Collagen type V alpha 1 chain. (1485 aa)
	LOC101816894	ZP domain-containing protein. (914 aa)
	LOC101817922	ZP domain-containing protein. (909 aa)
	COL21A1	Collagen type XXI alpha 1 chain. (959 aa)
	U3JH80_FICAL	Uncharacterized protein. (526 aa)
	VWA2	Von Willebrand factor A domain containing 2. (814 aa)
	TECTB	Tectorin beta. (329 aa)
	COL14A1	Collagen type XIV alpha 1 chain. (1895 aa)
	TBC1D31	TBC1 domain family member 31. (999 aa)
	COL12A1	Collagen type XII alpha 1 chain. (3129 aa)
	COL11A1	Collagen type XI alpha 1 chain. (1809 aa)
	U3JJF8_FICAL	VWFA domain-containing protein. (1614 aa)
	LAMC1	Laminin subunit gamma 1. (1574 aa)
	COL4A1-2	Collagen IV NC1 domain-containing protein. (193 aa)
	MFAP2	Microfibril associated protein 2. (187 aa)
	COL18A1	Collagen type XVIII alpha 1 chain. (1349 aa)
	COL6A1	Collagen type VI alpha 1 chain. (1039 aa)
	COL4A2	Collagen type IV alpha 2 chain. (826 aa)
	COL5A2	Fibrillar collagen NC1 domain-containing protein. (1300 aa)
	COL3A1	Collagen type III alpha 1 chain. (1460 aa)
	ENSFALP00000004686	annotation not available (119 aa)
	U3JSH8_FICAL	Uncharacterized protein. (473 aa)
	DPT	Dermatopontin. (199 aa)
	COL8A1	Collagen type VIII alpha 1 chain. (739 aa)
	LAMA3	Laminin subunit alpha 3. (3243 aa)
	U3JUU3_FICAL	Fibrillar collagen NC1 domain-containing protein. (1810 aa)
	LAMA1	Laminin subunit alpha 1. (3039 aa)
	IMPG2	Interphotoreceptor matrix proteoglycan 2. (1379 aa)
	ZPLD1	Zona pellucida like domain containing 1. (420 aa)
	COL4A4	Collagen type IV alpha 4 chain. (1686 aa)
	COL4A3	Collagen type IV alpha 3 chain. (1681 aa)
	COL19A1	Collagen type XIX alpha 1 chain. (680 aa)
	ZP4	Zona pellucida glycoprotein 4. (560 aa)
	MFAP5	Microfibril associated protein 5. (162 aa)
	U3JY22_FICAL	Uncharacterized protein. (364 aa)
	C1QL3	Complement C1q like 3. (258 aa)
	COL23A1	Uncharacterized protein. (526 aa)
	U3K0L0_FICAL	Uncharacterized protein. (2919 aa)
	COL17A1	Collagen type XVII alpha 1 chain. (1514 aa)
	C1QTNF2	C1q and TNF related 2. (284 aa)
	COLQ	Collagen like tail subunit of asymmetric acetylcholinesterase. (453 aa)
	C1QTNF7	C1q and TNF related 7. (291 aa)
	C1QL1	C1q domain-containing protein. (233 aa)
	LAMB1	Laminin subunit beta 1. (1649 aa)
	COL28A1	Collagen type XXVIII alpha 1 chain. (1159 aa)
	COL1A2	Collagen type I alpha 2 chain. (1332 aa)
	COL20A1	Uncharacterized protein. (1476 aa)
	COL9A3	Collagen type IX alpha 3 chain. (682 aa)
	U3K7K5_FICAL	Uncharacterized protein. (1213 aa)
	COL4A1	Collagen type IV alpha 1 chain. (1485 aa)
	LAMA5	Laminin subunit alpha 5. (3615 aa)
	KERA	Keratocan. (353 aa)
	DCN	Decorin; May affect the rate of fibrils formation. (358 aa)
	U3K808_FICAL	EMI domain-containing protein. (97 aa)
	U3K811_FICAL	C1q domain-containing protein. (142 aa)
	COL10A1	C1q domain-containing protein. (677 aa)
	U3K9E3_FICAL	ZP domain-containing protein. (474 aa)
	FBN1	Fibrillin 1. (2765 aa)
	U3KAJ6_FICAL	Uncharacterized protein. (880 aa)
	LAMA2	Uncharacterized protein. (1254 aa)
	U3KAQ1_FICAL	Laminin_I domain-containing protein. (216 aa)
	U3KAQ8_FICAL	Uncharacterized protein. (94 aa)
	U3KB81_FICAL	Uncharacterized protein. (1432 aa)
	ZP1	Zona pellucida glycoprotein 1. (921 aa)
	COL25A1	Collagen type XXV alpha 1 chain. (503 aa)
	ZP3	ZP domain-containing protein. (419 aa)
	FBN2	Fibrillin 2. (2761 aa)
	LAMB2	Laminin subunit beta 2. (1642 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1QTNF2	COL8A1	ENSFALP00000009290	ENSFALP00000006030	C1q and TNF related 2.	Collagen type VIII alpha 1 chain.	0.400
C1QTNF7	U3JSH8_FICAL	ENSFALP00000009724	ENSFALP00000005732	C1q and TNF related 7.	Uncharacterized protein.	0.558
COL10A1	COL4A1-2	ENSFALP00000011475	ENSFALP00000003316	C1q domain-containing protein.	Collagen IV NC1 domain-containing protein.	0.423
COL11A1	COL5A2	ENSFALP00000002679	ENSFALP00000004640	Collagen type XI alpha 1 chain.	Fibrillar collagen NC1 domain-containing protein.	0.467
COL13A1	COL4A1-2	ENSFALP00000013786	ENSFALP00000003316	Collagen type XIII alpha 1 chain.	Collagen IV NC1 domain-containing protein.	0.844
COL14A1	FBN1	ENSFALP00000002514	ENSFALP00000012028	Collagen type XIV alpha 1 chain.	Fibrillin 1.	0.556
COL17A1	COL27A1	ENSFALP00000009200	ENSFALP00000001341	Collagen type XVII alpha 1 chain.	Fibrillar collagen NC1 domain-containing protein.	0.488
COL17A1	COL8A1	ENSFALP00000009200	ENSFALP00000006030	Collagen type XVII alpha 1 chain.	Collagen type VIII alpha 1 chain.	0.448
COL17A1	LAMA3	ENSFALP00000009200	ENSFALP00000006391	Collagen type XVII alpha 1 chain.	Laminin subunit alpha 3.	0.414
COL17A1	LAMA5	ENSFALP00000009200	ENSFALP00000011015	Collagen type XVII alpha 1 chain.	Laminin subunit alpha 5.	0.414
COL17A1	LAMB3	ENSFALP00000009200	ENSFALP00000000527	Collagen type XVII alpha 1 chain.	Laminin subunit beta 3.	0.592
COL17A1	U3JJF8_FICAL	ENSFALP00000009200	ENSFALP00000002912	Collagen type XVII alpha 1 chain.	VWFA domain-containing protein.	0.400
COL17A1	U3JUU3_FICAL	ENSFALP00000009200	ENSFALP00000006547	Collagen type XVII alpha 1 chain.	Fibrillar collagen NC1 domain-containing protein.	0.486
COL19A1	COL4A1-2	ENSFALP00000007236	ENSFALP00000003316	Collagen type XIX alpha 1 chain.	Collagen IV NC1 domain-containing protein.	0.829
COL1A2	FBN1	ENSFALP00000010815	ENSFALP00000012028	Collagen type I alpha 2 chain.	Fibrillin 1.	0.542
COL1A2	U3KEH6_FICAL	ENSFALP00000010815	ENSFALP00000013430	Collagen type I alpha 2 chain.	VWFC domain-containing protein.	0.417
COL21A1	U3JJF8_FICAL	ENSFALP00000001897	ENSFALP00000002912	Collagen type XXI alpha 1 chain.	VWFA domain-containing protein.	0.462
COL23A1	COL4A1-2	ENSFALP00000008010	ENSFALP00000003316	Uncharacterized protein.	Collagen IV NC1 domain-containing protein.	0.465
COL23A1	COL8A1	ENSFALP00000008010	ENSFALP00000006030	Uncharacterized protein.	Collagen type VIII alpha 1 chain.	0.404
COL25A1	COL4A1-2	ENSFALP00000012758	ENSFALP00000003316	Collagen type XXV alpha 1 chain.	Collagen IV NC1 domain-containing protein.	0.879