14 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADAM17	ADAM metallopeptidase domain 17. (827 aa)
	ADAM19	ADAM metallopeptidase domain 19. (880 aa)
	DAG1	Dystroglycan 1. (897 aa)
	SPPL2A	Signal peptide peptidase like 2A. (504 aa)
	PSEN2	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (458 aa)
	SPPL2B	Signal peptide peptidase like 2B. (596 aa)
	ADAM10	ADAM metallopeptidase domain 10. (711 aa)
	BACE2	Beta-secretase 2; Belongs to the peptidase A1 family. (439 aa)
	LRIG2	Leucine rich repeats and immunoglobulin like domains 2. (952 aa)
	MMP7	ZnMc domain-containing protein. (266 aa)
	U3JMR6_FICAL	Peptidase S72 domain-containing protein. (694 aa)
	PSEN1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (467 aa)
	BACE1	Beta-secretase 1; Belongs to the peptidase A1 family. (439 aa)
	NCSTN	Nicastrin. (657 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADAM10	NCSTN	ENSFALP00000012794	ENSFALP00000007736	ADAM metallopeptidase domain 10.	Nicastrin.	0.616
ADAM10	PSEN1	ENSFALP00000012794	ENSFALP00000005698	ADAM metallopeptidase domain 10.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.513
ADAM10	PSEN2	ENSFALP00000012794	ENSFALP00000012038	ADAM metallopeptidase domain 10.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.478
ADAM17	MMP7	ENSFALP00000006918	ENSFALP00000000379	ADAM metallopeptidase domain 17.	ZnMc domain-containing protein.	0.445
ADAM17	NCSTN	ENSFALP00000006918	ENSFALP00000007736	ADAM metallopeptidase domain 17.	Nicastrin.	0.543
MMP7	ADAM17	ENSFALP00000000379	ENSFALP00000006918	ZnMc domain-containing protein.	ADAM metallopeptidase domain 17.	0.445
NCSTN	ADAM10	ENSFALP00000007736	ENSFALP00000012794	Nicastrin.	ADAM metallopeptidase domain 10.	0.616
NCSTN	ADAM17	ENSFALP00000007736	ENSFALP00000006918	Nicastrin.	ADAM metallopeptidase domain 17.	0.543
NCSTN	PSEN1	ENSFALP00000007736	ENSFALP00000005698	Nicastrin.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.997
NCSTN	PSEN2	ENSFALP00000007736	ENSFALP00000012038	Nicastrin.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.997
PSEN1	ADAM10	ENSFALP00000005698	ENSFALP00000012794	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	ADAM metallopeptidase domain 10.	0.513
PSEN1	NCSTN	ENSFALP00000005698	ENSFALP00000007736	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Nicastrin.	0.997
PSEN1	PSEN2	ENSFALP00000005698	ENSFALP00000012038	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.998
PSEN2	ADAM10	ENSFALP00000012038	ENSFALP00000012794	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	ADAM metallopeptidase domain 10.	0.478
PSEN2	NCSTN	ENSFALP00000012038	ENSFALP00000007736	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Nicastrin.	0.997
PSEN2	PSEN1	ENSFALP00000012038	ENSFALP00000005698	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.998