45 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARHGAP45	Rho GTPase activating protein 45. (1027 aa)
	PSD2	Pleckstrin and Sec7 domain containing 2. (640 aa)
	HIP1R	Huntingtin interacting protein 1 related. (1057 aa)
	SPATA13	Uncharacterized protein. (1385 aa)
	ITGB3	Integrin beta; Belongs to the integrin beta chain family. (780 aa)
	RPS3	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (319 aa)
	MTSS2	MTSS I-BAR domain containing 2. (743 aa)
	PSD	Pleckstrin and Sec7 domain containing. (953 aa)
	TESC	Tescalcin. (213 aa)
	JCAD	Junctional cadherin 5 associated. (1347 aa)
	ITGB1	Integrin beta; Belongs to the integrin beta chain family. (651 aa)
	PLCG2	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1265 aa)
	PACSIN2	Protein kinase C and casein kinase substrate in neurons 2. (485 aa)
	INPP5K	Inositol polyphosphate-5-phosphatase K. (545 aa)
	PLA2G4F	Phospholipase A2. (852 aa)
	PLCG1	Phosphoinositide phospholipase C. (1155 aa)
	CLASP2	Uncharacterized protein. (1523 aa)
	TIRAP	TIR domain containing adaptor protein. (237 aa)
	PSD3	Pleckstrin and Sec7 domain containing 3. (984 aa)
	PACSIN1	Protein kinase C and casein kinase substrate in neurons 1. (445 aa)
	EPHA2	EPH receptor A2. (923 aa)
	EPS8L3	SH3 domain-containing protein. (620 aa)
	C2CD5	C2 calcium dependent domain containing 5. (1134 aa)
	MYO6	Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1299 aa)
	MTMR9	Myotubularin related protein 9. (550 aa)
	TLN1	Talin 1. (2544 aa)
	SH3YL1	SH3 and SYLF domain containing 1. (307 aa)
	PDE9A	Phosphodiesterase. (496 aa)
	AIF1L	Allograft inflammatory factor 1 like. (152 aa)
	DDX58	DExD/H-box helicase 58. (888 aa)
	U3JCZ0_FICAL	Myotubularin phosphatase domain-containing protein. (544 aa)
	EPS8L2	EPS8 like 2. (637 aa)
	U3K5R9_FICAL	Uncharacterized protein. (145 aa)
	EPS8	Epidermal growth factor receptor pathway substrate 8. (848 aa)
	ARF6	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	SPRY4	Sprouty RTK signaling antagonist 4. (296 aa)
	LOC101820005	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1295 aa)
	CIB3	Calcium and integrin binding family member 3. (196 aa)
	APPL2	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2. (615 aa)
	EPB41L5	Erythrocyte membrane protein band 4.1 like 5. (767 aa)
	FAM107A	Family with sequence similarity 107 member A. (167 aa)
	EZR	Ezrin. (648 aa)
	PIP5K1C	Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma. (724 aa)
	U3K9U3_FICAL	Uncharacterized protein. (1428 aa)
	CIB1	Calcium and integrin binding 1. (227 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APPL2	ARF6	ENSFALP00000014021	ENSFALP00000015092	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.469
ARF6	APPL2	ENSFALP00000015092	ENSFALP00000014021	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	0.469
ARF6	PSD	ENSFALP00000015092	ENSFALP00000007620	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Pleckstrin and Sec7 domain containing.	0.432
ARF6	PSD2	ENSFALP00000015092	ENSFALP00000009854	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Pleckstrin and Sec7 domain containing 2.	0.432
ARF6	PSD3	ENSFALP00000015092	ENSFALP00000005229	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Pleckstrin and Sec7 domain containing 3.	0.432
EPS8L3	MTSS2	ENSFALP00000003111	ENSFALP00000007687	SH3 domain-containing protein.	MTSS I-BAR domain containing 2.	0.519
INPP5K	LOC101820005	ENSFALP00000006962	ENSFALP00000009936	Inositol polyphosphate-5-phosphatase K.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.687
INPP5K	PLCG1	ENSFALP00000006962	ENSFALP00000005805	Inositol polyphosphate-5-phosphatase K.	Phosphoinositide phospholipase C.	0.687
INPP5K	PLCG2	ENSFALP00000006962	ENSFALP00000007081	Inositol polyphosphate-5-phosphatase K.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.687
ITGB1	ITGB3	ENSFALP00000007415	ENSFALP00000008416	Integrin beta; Belongs to the integrin beta chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.658
ITGB1	TLN1	ENSFALP00000007415	ENSFALP00000002301	Integrin beta; Belongs to the integrin beta chain family.	Talin 1.	0.897
ITGB3	ITGB1	ENSFALP00000008416	ENSFALP00000007415	Integrin beta; Belongs to the integrin beta chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.658
ITGB3	TLN1	ENSFALP00000008416	ENSFALP00000002301	Integrin beta; Belongs to the integrin beta chain family.	Talin 1.	0.942
LOC101820005	INPP5K	ENSFALP00000009936	ENSFALP00000006962	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	Inositol polyphosphate-5-phosphatase K.	0.687
LOC101820005	PLA2G4F	ENSFALP00000009936	ENSFALP00000006120	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	Phospholipase A2.	0.900
LOC101820005	PLCG1	ENSFALP00000009936	ENSFALP00000005805	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	Phosphoinositide phospholipase C.	0.901
LOC101820005	PLCG2	ENSFALP00000009936	ENSFALP00000007081	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.902
MTSS2	EPS8L3	ENSFALP00000007687	ENSFALP00000003111	MTSS I-BAR domain containing 2.	SH3 domain-containing protein.	0.519
PACSIN1	PACSIN2	ENSFALP00000003930	ENSFALP00000006976	Protein kinase C and casein kinase substrate in neurons 1.	Protein kinase C and casein kinase substrate in neurons 2.	0.846
PACSIN2	PACSIN1	ENSFALP00000006976	ENSFALP00000003930	Protein kinase C and casein kinase substrate in neurons 2.	Protein kinase C and casein kinase substrate in neurons 1.	0.846