64 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WFS1	Wolframin ER transmembrane glycoprotein. (873 aa)
	CRLF1	Cytokine receptor like factor 1. (386 aa)
	PPARGC1A	PPARG coactivator 1 alpha. (791 aa)
	IGF1	Insulin like growth factor 1. (153 aa)
	SNCB	Beta-synuclein; Belongs to the synuclein family. (93 aa)
	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	NDNF	Neuron derived neurotrophic factor. (572 aa)
	BIRC5	Baculoviral IAP repeat containing 5. (140 aa)
	RETREG1	Reticulophagy regulator 1. (362 aa)
	AARS1	Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. (968 aa)
	XRCC2	X-ray repair cross complementing 2. (267 aa)
	NTF3	Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family. (257 aa)
	AMBRA1	Autophagy and beclin 1 regulator 1. (1301 aa)
	U3JUK3_FICAL	Uncharacterized protein. (243 aa)
	ROCK1	Uncharacterized protein. (1150 aa)
	OXR1	Oxidation resistance 1. (883 aa)
	TYRO3	TYRO3 protein tyrosine kinase. (942 aa)
	DNAJC5	DnaJ heat shock protein family (Hsp40) member C5. (214 aa)
	ZPR1	ZPR1 zinc finger. (462 aa)
	BCL2L1	BCL2 like 1. (230 aa)
	DNAJC5B	DnaJ heat shock protein family (Hsp40) member C5 beta. (196 aa)
	VSTM2L	V-set and transmembrane domain containing 2 like. (177 aa)
	LOC101808801	Uncharacterized protein. (183 aa)
	GABRA5	Gamma-aminobutyric acid type A receptor alpha5 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (463 aa)
	KDR	Kinase insert domain receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1345 aa)
	NES	IF rod domain-containing protein; Belongs to the intermediate filament family. (301 aa)
	HDGF	Heparin binding growth factor. (212 aa)
	NTRK1	Tyrosine-protein kinase receptor. (739 aa)
	KIF14	Kinesin family member 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1637 aa)
	LGMN	Legumain. (431 aa)
	LOC101810239	Uncharacterized protein. (553 aa)
	GDNF	Glial cell derived neurotrophic factor. (218 aa)
	DLX1	Distal-less homeobox 1. (245 aa)
	CLN8	TLC domain-containing protein. (300 aa)
	PPT1	Palmitoyl-protein thioesterase 1. (298 aa)
	GCLC	Glutamate-cysteine ligase catalytic subunit. (583 aa)
	GFRAL	GDNF family receptor alpha like. (314 aa)
	SEMA3E	Semaphorin 3E; Belongs to the semaphorin family. (738 aa)
	PINK1	PTEN induced kinase 1. (473 aa)
	RASA1	RAS p21 protein activator 1. (813 aa)
	F2R	Coagulation factor II thrombin receptor; Belongs to the G-protein coupled receptor 1 family. (421 aa)
	PTPRZ1	Protein-tyrosine-phosphatase. (2349 aa)
	GRN	Uncharacterized protein. (214 aa)
	NGF	Nerve growth factor; Belongs to the NGF-beta family. (237 aa)
	PLXND1	Plexin D1. (1620 aa)
	VPS54	VPS54 subunit of GARP complex. (893 aa)
	UNC5B	Unc-5 netrin receptor B. (872 aa)
	ADNP	Activity dependent neuroprotector homeobox. (1225 aa)
	BCL2	BCL2 apoptosis regulator. (239 aa)
	TFAP2D	Transcription factor AP-2 delta. (452 aa)
	ALKBH1	AlkB homolog 1, histone H2A dioxygenase. (370 aa)
	NTRK2	Tyrosine-protein kinase receptor. (796 aa)
	BDNF	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family. (254 aa)
	CLCF1	Cardiotrophin like cytokine factor 1. (229 aa)
	SLC30A10	Solute carrier family 30 member 10. (434 aa)
	PRKN	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (461 aa)
	SOD2	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (176 aa)
	BTG2	BTG anti-proliferation factor 2. (124 aa)
	MAP2K4	Mitogen-activated protein kinase kinase 4; Belongs to the protein kinase superfamily. (396 aa)
	NEFL	Neurofilament light; Belongs to the intermediate filament family. (556 aa)
	MSH2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (851 aa)
	CNTF	Ciliary neurotrophic factor. (150 aa)
	IL6ST	Interleukin 6 signal transducer. (855 aa)
	U3K8L5_FICAL	J domain-containing protein. (146 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMBRA1	BCL2	ENSFALP00000006528	ENSFALP00000013568	Autophagy and beclin 1 regulator 1.	BCL2 apoptosis regulator.	0.565
AMBRA1	PRKN	ENSFALP00000006528	ENSFALP00000012711	Autophagy and beclin 1 regulator 1.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.954
BCL2	AMBRA1	ENSFALP00000013568	ENSFALP00000006528	BCL2 apoptosis regulator.	Autophagy and beclin 1 regulator 1.	0.565
BCL2	BCL2L1	ENSFALP00000013568	ENSFALP00000005771	BCL2 apoptosis regulator.	BCL2 like 1.	0.978
BCL2	BDNF	ENSFALP00000013568	ENSFALP00000012806	BCL2 apoptosis regulator.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.573
BCL2L1	BCL2	ENSFALP00000005771	ENSFALP00000013568	BCL2 like 1.	BCL2 apoptosis regulator.	0.978
BCL2L1	PINK1	ENSFALP00000005771	ENSFALP00000010988	BCL2 like 1.	PTEN induced kinase 1.	0.932
BDNF	BCL2	ENSFALP00000012806	ENSFALP00000013568	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	BCL2 apoptosis regulator.	0.573
BDNF	CNTF	ENSFALP00000012806	ENSFALP00000011471	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	Ciliary neurotrophic factor.	0.684
BDNF	GDNF	ENSFALP00000012806	ENSFALP00000002127	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	Glial cell derived neurotrophic factor.	0.672
BDNF	KDR	ENSFALP00000012806	ENSFALP00000003774	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	Kinase insert domain receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.824
BDNF	NES	ENSFALP00000012806	ENSFALP00000003410	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.512
BDNF	NTF3	ENSFALP00000012806	ENSFALP00000006872	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.	0.856
BDNF	NTRK1	ENSFALP00000012806	ENSFALP00000003167	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	Tyrosine-protein kinase receptor.	0.813
BDNF	NTRK2	ENSFALP00000012806	ENSFALP00000013011	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	Tyrosine-protein kinase receptor.	0.970
BDNF	TYRO3	ENSFALP00000012806	ENSFALP00000006334	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	TYRO3 protein tyrosine kinase.	0.418
CLCF1	CNTF	ENSFALP00000012772	ENSFALP00000011471	Cardiotrophin like cytokine factor 1.	Ciliary neurotrophic factor.	0.783
CLCF1	CRLF1	ENSFALP00000012772	ENSFALP00000009804	Cardiotrophin like cytokine factor 1.	Cytokine receptor like factor 1.	0.851
CLCF1	IL6ST	ENSFALP00000012772	ENSFALP00000011441	Cardiotrophin like cytokine factor 1.	Interleukin 6 signal transducer.	0.929
CLN8	PPT1	ENSFALP00000002036	ENSFALP00000000535	TLC domain-containing protein.	Palmitoyl-protein thioesterase 1.	0.625