37 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DNAJC5B	DnaJ heat shock protein family (Hsp40) member C5 beta. (196 aa)
	SPG11	SPG11 vesicle trafficking associated, spatacsin. (2361 aa)
	FAM162A	Family with sequence similarity 162 member A. (158 aa)
	TMTC4	Transmembrane O-mannosyltransferase targeting cadherins 4. (763 aa)
	NES	IF rod domain-containing protein; Belongs to the intermediate filament family. (301 aa)
	NTRK1	Tyrosine-protein kinase receptor. (739 aa)
	CASP7	Caspase 7; Belongs to the peptidase C14A family. (310 aa)
	DLX1	Distal-less homeobox 1. (245 aa)
	CLN8	TLC domain-containing protein. (300 aa)
	TNFRSF21	TNF receptor superfamily member 21. (669 aa)
	FADD	Fas associated via death domain. (227 aa)
	ATM	Non-specific serine/threonine protein kinase. (3066 aa)
	CDK5	Cyclin dependent kinase 5. (213 aa)
	ADNP	Activity dependent neuroprotector homeobox. (1225 aa)
	BCL2	BCL2 apoptosis regulator. (239 aa)
	APP	Amyloid beta precursor protein. (738 aa)
	AIFM1	Apoptosis inducing factor mitochondria associated 1. (575 aa)
	NEFL	Neurofilament light; Belongs to the intermediate filament family. (556 aa)
	APAF1	Apoptotic peptidase activating factor 1. (1267 aa)
	U3K8L5_FICAL	J domain-containing protein. (146 aa)
	CASP9	Caspase 9; Belongs to the peptidase C14A family. (415 aa)
	PPARGC1A	PPARG coactivator 1 alpha. (791 aa)
	DIABLO	Uncharacterized protein. (273 aa)
	SNCB	Beta-synuclein; Belongs to the synuclein family. (93 aa)
	RB1	RB transcriptional corepressor 1. (924 aa)
	CIT	Citron Rho-interacting kinase; Plays a role in cytokinesis. Displays serine/threonine protein kinase activity; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (2062 aa)
	NCSTN	Nicastrin. (657 aa)
	AARS1	Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. (968 aa)
	NGFR	Nerve growth factor receptor. (409 aa)
	POLB	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (335 aa)
	U3JUK3_FICAL	Uncharacterized protein. (243 aa)
	ROCK1	Uncharacterized protein. (1150 aa)
	OXR1	Oxidation resistance 1. (883 aa)
	DNAJC5	DnaJ heat shock protein family (Hsp40) member C5. (214 aa)
	BCL2L1	BCL2 like 1. (230 aa)
	PIGT	Phosphatidylinositol glycan anchor biosynthesis class T. (516 aa)
	PSEN1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (467 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIFM1	APAF1	ENSFALP00000012130	ENSFALP00000011473	Apoptosis inducing factor mitochondria associated 1.	Apoptotic peptidase activating factor 1.	0.512
AIFM1	CASP9	ENSFALP00000012130	ENSFALP00000010959	Apoptosis inducing factor mitochondria associated 1.	Caspase 9; Belongs to the peptidase C14A family.	0.523
AIFM1	DIABLO	ENSFALP00000012130	ENSFALP00000009500	Apoptosis inducing factor mitochondria associated 1.	Uncharacterized protein.	0.525
APAF1	AIFM1	ENSFALP00000011473	ENSFALP00000012130	Apoptotic peptidase activating factor 1.	Apoptosis inducing factor mitochondria associated 1.	0.512
APAF1	ATM	ENSFALP00000011473	ENSFALP00000000464	Apoptotic peptidase activating factor 1.	Non-specific serine/threonine protein kinase.	0.461
APAF1	BCL2	ENSFALP00000011473	ENSFALP00000013568	Apoptotic peptidase activating factor 1.	BCL2 apoptosis regulator.	0.822
APAF1	BCL2L1	ENSFALP00000011473	ENSFALP00000005771	Apoptotic peptidase activating factor 1.	BCL2 like 1.	0.821
APAF1	CASP7	ENSFALP00000011473	ENSFALP00000002340	Apoptotic peptidase activating factor 1.	Caspase 7; Belongs to the peptidase C14A family.	0.860
APAF1	CASP9	ENSFALP00000011473	ENSFALP00000010959	Apoptotic peptidase activating factor 1.	Caspase 9; Belongs to the peptidase C14A family.	0.991
APAF1	DIABLO	ENSFALP00000011473	ENSFALP00000009500	Apoptotic peptidase activating factor 1.	Uncharacterized protein.	0.961
APAF1	FADD	ENSFALP00000011473	ENSFALP00000001425	Apoptotic peptidase activating factor 1.	Fas associated via death domain.	0.540
APP	CDK5	ENSFALP00000012506	ENSFALP00000013642	Amyloid beta precursor protein.	Cyclin dependent kinase 5.	0.502
APP	NCSTN	ENSFALP00000012506	ENSFALP00000007736	Amyloid beta precursor protein.	Nicastrin.	0.927
APP	NEFL	ENSFALP00000012506	ENSFALP00000011651	Amyloid beta precursor protein.	Neurofilament light; Belongs to the intermediate filament family.	0.411
APP	NGFR	ENSFALP00000012506	ENSFALP00000007293	Amyloid beta precursor protein.	Nerve growth factor receptor.	0.709
APP	PSEN1	ENSFALP00000012506	ENSFALP00000005698	Amyloid beta precursor protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.959
APP	TNFRSF21	ENSFALP00000012506	ENSFALP00000001637	Amyloid beta precursor protein.	TNF receptor superfamily member 21.	0.918
ATM	APAF1	ENSFALP00000000464	ENSFALP00000011473	Non-specific serine/threonine protein kinase.	Apoptotic peptidase activating factor 1.	0.461
BCL2	APAF1	ENSFALP00000013568	ENSFALP00000011473	BCL2 apoptosis regulator.	Apoptotic peptidase activating factor 1.	0.822
BCL2	BCL2L1	ENSFALP00000013568	ENSFALP00000005771	BCL2 apoptosis regulator.	BCL2 like 1.	0.978