88 items (Ficedula albicollis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POLR3F	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (275 aa)
	PML	Uncharacterized protein. (49 aa)
	U3KJX2_FICAL	Uncharacterized protein. (65 aa)
	TRIM32	Tripartite motif containing 32. (647 aa)
	LOC101815751	Uncharacterized protein. (189 aa)
	ILF3	Interleukin enhancer binding factor 3. (861 aa)
	DTX3L	Deltex E3 ubiquitin ligase 3L. (798 aa)
	DDX21	Uncharacterized protein. (689 aa)
	U3KEZ3_FICAL	Uncharacterized protein. (675 aa)
	BCL2	BCL2 apoptosis regulator. (239 aa)
	EXOSC5	Exosome component 5. (191 aa)
	U3KED0_FICAL	Uncharacterized protein. (190 aa)
	NMBR	Neuromedin B receptor; Belongs to the G-protein coupled receptor 1 family. (388 aa)
	DDIT4	DNA damage inducible transcript 4. (184 aa)
	SAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1. (551 aa)
	IFNAR2	Interfer-bind domain-containing protein. (431 aa)
	TTC4	Tetratricopeptide repeat domain 4. (402 aa)
	IRF7	Interferon regulatory factor 7. (512 aa)
	POLR3H	RNA polymerase III subunit H. (206 aa)
	TLR3	Toll like receptor 3; Belongs to the Toll-like receptor family. (896 aa)
	EIF2AK2	Eukaryotic translation initiation factor 2 alpha kinase 2. (549 aa)
	IRF2	Interferon regulatory factor. (348 aa)
	CNOT7	CCR4-NOT transcription complex subunit 7. (285 aa)
	U3K9W0_FICAL	Uncharacterized protein. (468 aa)
	BNIP3L	BCL2 interacting protein 3 like. (203 aa)
	POLR3D	RNA polymerase III subunit D. (338 aa)
	AGBL5	ATP/GTP binding protein like 5. (734 aa)
	U3K800_FICAL	Fibronectin type-III domain-containing protein. (113 aa)
	IRF5	Interferon regulatory factor 5. (292 aa)
	OPRK1	Opioid receptor kappa 1; Belongs to the G-protein coupled receptor 1 family. (381 aa)
	IFNG	Interferon gamma; Produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma, in addition to having antiviral activity, has important immunoregulatory functions. It is a potent activator of macrophages, it has antiproliferative effects on transformed cells and it can potentiate the antiviral and antitumor effects of the type I interferons. (165 aa)
	SPON2	Spondin 2. (330 aa)
	IL6	Interleukin 6. (165 aa)
	NDUFAF4	NADH:ubiquinone oxidoreductase complex assembly factor 4. (183 aa)
	MAP3K14	Mitogen-activated protein kinase kinase kinase 14. (941 aa)
	STING1	Transmembrane protein 173. (379 aa)
	DHX15	DEAH-box helicase 15. (686 aa)
	IL12B	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (284 aa)
	OASL	2'-5'-oligoadenylate synthetase like. (536 aa)
	TRIM8	Tripartite motif containing 8. (559 aa)
	G3BP1	G3BP stress granule assembly factor 1. (472 aa)
	RNASEL	Uncharacterized protein. (694 aa)
	ABCF3	ATP binding cassette subfamily F member 3. (712 aa)
	LSM14A	LSM14A mRNA processing body assembly factor. (456 aa)
	IFIT5	TPR_REGION domain-containing protein. (436 aa)
	RNF185	Ring finger protein 185. (194 aa)
	MLKL	Mixed lineage kinase domain like pseudokinase. (484 aa)
	AICDA	Activation induced cytidine deaminase. (196 aa)
	ZDHHC1	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (486 aa)
	CGAS	Cyclic GMP-AMP synthase. (340 aa)
	NLRC5	NLR family CARD domain containing 5. (1873 aa)
	ZMYND11	Zinc finger MYND-type containing 11. (617 aa)
	NCBP3	Nuclear cap binding subunit 3. (573 aa)
	RSAD2	Radical S-adenosyl methionine domain containing 2. (346 aa)
	SENP7	SUMO specific peptidase 7. (1045 aa)
	CLPB	ClpB homolog, mitochondrial AAA ATPase chaperonin. (598 aa)
	RIOK3	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (516 aa)
	U3JTW3_FICAL	Phospholipase A(2). (170 aa)
	BCL2L1	BCL2 like 1. (230 aa)
	U3JRY1_FICAL	Pepdidase_M14_N domain-containing protein. (99 aa)
	AGBL4	Uncharacterized protein. (228 aa)
	DHX36	DEAH-box helicase 36. (929 aa)
	AKAP1	A-kinase anchoring protein 1. (876 aa)
	ZNFX1	Zinc finger NFX1-type containing 1. (1890 aa)
	CD40	CD40 molecule. (280 aa)
	TLR7	Toll like receptor 7; Belongs to the Toll-like receptor family. (1047 aa)
	POLR3K	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (112 aa)
	PLA2G10	Phospholipase A(2). (141 aa)
	ABCC9	ATP binding cassette subfamily C member 9. (1574 aa)
	KCNJ8	Potassium voltage-gated channel subfamily J member 8. (421 aa)
	LOC101811547	Uncharacterized protein. (192 aa)
	PTPRC	Protein tyrosine phosphatase receptor type C. (1201 aa)
	GPAM	Glycerol-3-phosphate acyltransferase 1, mitochondrial. (828 aa)
	MX1	MX dynamin like GTPase 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (709 aa)
	SETD2	SET domain containing 2, histone lysine methyltransferase. (2535 aa)
	CARD9	Caspase recruitment domain family member 9. (542 aa)
	FADD	Fas associated via death domain. (227 aa)
	BNIP3	BCL2 interacting protein 3. (211 aa)
	ADAR	Adenosine deaminase RNA specific. (1060 aa)
	DDX58	DExD/H-box helicase 58. (888 aa)
	ACOD1	Aconitate decarboxylase 1. (474 aa)
	BECN1	Uncharacterized protein. (407 aa)
	IFIH1	Interferon induced with helicase C domain 1. (1014 aa)
	DHX58	DExH-box helicase 58. (635 aa)
	IRF6	Interferon regulatory factor 6. (403 aa)
	IFNLR1	Fibronectin type-III domain-containing protein. (205 aa)
	MAVS	CARD_2 domain-containing protein. (619 aa)
	VAMP8	Vesicle associated membrane protein 8. (110 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCC9	KCNJ8	ENSFALP00000003733	ENSFALP00000003728	ATP binding cassette subfamily C member 9.	Potassium voltage-gated channel subfamily J member 8.	0.971
ABCC9	RNF185	ENSFALP00000003733	ENSFALP00000007811	ATP binding cassette subfamily C member 9.	Ring finger protein 185.	0.418
ACOD1	U3K9W0_FICAL	ENSFALP00000000906	ENSFALP00000011814	Aconitate decarboxylase 1.	Uncharacterized protein.	0.902
ADAR	DDX58	ENSFALP00000001289	ENSFALP00000001210	Adenosine deaminase RNA specific.	DExD/H-box helicase 58.	0.412
ADAR	EIF2AK2	ENSFALP00000001289	ENSFALP00000012422	Adenosine deaminase RNA specific.	Eukaryotic translation initiation factor 2 alpha kinase 2.	0.590
ADAR	IFIH1	ENSFALP00000001289	ENSFALP00000000746	Adenosine deaminase RNA specific.	Interferon induced with helicase C domain 1.	0.522
ADAR	SAMHD1	ENSFALP00000001289	ENSFALP00000013162	Adenosine deaminase RNA specific.	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1.	0.401
ADAR	ZNFX1	ENSFALP00000001289	ENSFALP00000005120	Adenosine deaminase RNA specific.	Zinc finger NFX1-type containing 1.	0.532
AGBL4	U3JRY1_FICAL	ENSFALP00000005523	ENSFALP00000005535	Uncharacterized protein.	Pepdidase_M14_N domain-containing protein.	0.896
AICDA	CD40	ENSFALP00000007578	ENSFALP00000005022	Activation induced cytidine deaminase.	CD40 molecule.	0.462
AICDA	U3K800_FICAL	ENSFALP00000007578	ENSFALP00000011154	Activation induced cytidine deaminase.	Fibronectin type-III domain-containing protein.	0.537
BCL2	BCL2L1	ENSFALP00000013568	ENSFALP00000005771	BCL2 apoptosis regulator.	BCL2 like 1.	0.978
BCL2	BECN1	ENSFALP00000013568	ENSFALP00000000757	BCL2 apoptosis regulator.	Uncharacterized protein.	0.994
BCL2	BNIP3	ENSFALP00000013568	ENSFALP00000001300	BCL2 apoptosis regulator.	BCL2 interacting protein 3.	0.978
BCL2	BNIP3L	ENSFALP00000013568	ENSFALP00000011755	BCL2 apoptosis regulator.	BCL2 interacting protein 3 like.	0.749
BCL2	FADD	ENSFALP00000013568	ENSFALP00000001425	BCL2 apoptosis regulator.	Fas associated via death domain.	0.464
BCL2	IFNG	ENSFALP00000013568	ENSFALP00000010505	BCL2 apoptosis regulator.	Interferon gamma; Produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma, in addition to having antiviral activity, has important immunoregulatory functions. It is a potent activator of macrophages, it has antiproliferative effects on transformed cells and it can potentiate the antiviral and antitumor effects of the type I interferons.	0.447
BCL2	IL6	ENSFALP00000013568	ENSFALP00000010154	BCL2 apoptosis regulator.	Interleukin 6.	0.521
BCL2L1	BCL2	ENSFALP00000005771	ENSFALP00000013568	BCL2 like 1.	BCL2 apoptosis regulator.	0.978
BCL2L1	BECN1	ENSFALP00000005771	ENSFALP00000000757	BCL2 like 1.	Uncharacterized protein.	0.995