19 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NCSTN	Nicastrin. (657 aa)
	CALB2	Calbindin 2. (270 aa)
	SHANK3	SAM domain-containing protein. (1139 aa)
	IGSF11	Immunoglobulin superfamily member 11. (431 aa)
	EIF2AK4	Eukaryotic translation initiation factor 2 alpha kinase 4. (1535 aa)
	CALB1	Calbindin 1. (235 aa)
	SCGN	Secretagogin, EF-hand calcium binding protein. (273 aa)
	AKAP5	A-kinase anchoring protein 5. (446 aa)
	CYP46A1	Cytochrome P450 family 46 subfamily A member 1; Belongs to the cytochrome P450 family. (501 aa)
	ADCY8	Adenylate cyclase type 8; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1241 aa)
	LGMN	Legumain. (431 aa)
	SHANK3-2	ANK_REP_REGION domain-containing protein. (255 aa)
	APP	Amyloid beta precursor protein. (738 aa)
	ARC	Activity regulated cytoskeleton associated protein. (404 aa)
	ADCY1	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1127 aa)
	YTHDF1	YTH N6-methyladenosine RNA binding protein 1. (559 aa)
	NPTN	Neuroplastin. (424 aa)
	CRTC1	CREB regulated transcription coactivator 1. (558 aa)
	SQSTM1	Sequestosome 1. (452 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADCY1	ADCY8	ENSFALP00000013795	ENSFALP00000002681	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Adenylate cyclase type 8; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.956
ADCY8	ADCY1	ENSFALP00000002681	ENSFALP00000013795	Adenylate cyclase type 8; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.956
APP	NCSTN	ENSFALP00000012506	ENSFALP00000007736	Amyloid beta precursor protein.	Nicastrin.	0.927
NCSTN	APP	ENSFALP00000007736	ENSFALP00000012506	Nicastrin.	Amyloid beta precursor protein.	0.927
SHANK3	SHANK3-2	ENSFALP00000006800	ENSFALP00000012498	SAM domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.908
SHANK3-2	SHANK3	ENSFALP00000012498	ENSFALP00000006800	ANK_REP_REGION domain-containing protein.	SAM domain-containing protein.	0.908